NCBI Home Page NCBI Site Search page NCBI Guide that lists and describes the NCBI resources
Conserved domains on  [gi|2044067328|ref|YP_008378738|]
View 

cytochrome b (mitochondrion) [Appalachioria falcifera]

Protein Classification

cytochrome b/b6( domain architecture ID 11475928)

cytochrome b/b6 (PetB) is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme; cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes; in plants and cyanobacteria, cytochrome b6 is analogous to cytochrome b and contains two chains: helices A-D (encoded by petB) and helices E-H (encoded by petD)

Graphical summary

 Zoom to residue level

show extra options »

Show site features     Horizontal zoom: ×

List of domain hits

 Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-364 0e+00

cytochrome b; Provisional


:

Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  14 FMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVC 93
Cdd:MTH00156    4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  94 LYMHVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNP 173
Cdd:MTH00156   84 IYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 174 TLVRFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDS 253
Cdd:MTH00156  164 TLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDP 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 254 ENFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLFTGELKLGGWFIFW-RAMFWCFVVIFI 332
Cdd:MTH00156  244 ENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPInKILFWIFVNIVI 323

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2044067328 333 LLTWIGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00156  324 LLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  14 FMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVC 93
Cdd:MTH00156    4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  94 LYMHVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNP 173
Cdd:MTH00156   84 IYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 174 TLVRFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDS 253
Cdd:MTH00156  164 TLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDP 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 254 ENFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLFTGELKLGGWFIFW-RAMFWCFVVIFI 332
Cdd:MTH00156  244 ENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPInKILFWIFVNIVI 323

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2044067328 333 LLTWIGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00156  324 LLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-363 5.58e-90

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 275.90  E-value: 5.58e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  11 VGGFMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLF 90
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  91 FVCLYMHVGRGLYYGSY-----VlfhVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVW 165
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 166 GGFSVGNPTLVRFFAF-HFLFPFLIVGLVLVHLLFLHETGSSMPLG----LNSDVLSVEFHPYFSVSDLYGLCWVLGGLL 240
Cdd:COG1290   177 GGEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 241 FVVLFYPNalGDSENFISANPLVTPEHIQPEWYFLFAYAILRSIP--NKLGGVVALVMSILILFVCSLF-TGELKLGGWF 317
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLdRSPVRSPRYR 334

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 2044067328 318 IFWRAMFWCFVVIFILLTWIGARPveDPYVMIGQGLTVLYFLVFVL 363
Cdd:COG1290   335 PVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 18-206 1.38e-63

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 201.44  E-value: 1.38e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:cd00284    10 LIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLH 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFH--VWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTL 175
Cdd:cd00284    90 IFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATL 169

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2044067328 176 VRFFAFHFLFPFLIVGLVLVHLLFLHETGSS 206
Cdd:cd00284   170 TRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-177 2.29e-56

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 182.58  E-value: 2.29e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYG--SYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160


                  ..
gi 2044067328 176 VR 177
Cdd:pfam00033 161 TR 162
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-296 2.02e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.10  E-value: 2.02e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2044067328 259 ANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVM 296
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Name Accession Description Interval E-value
CYTB MTH00156
cytochrome b; Provisional
 14-364 0e+00

cytochrome b; Provisional


Pssm-ID: 214440 [Multi-domain]  Cd Length: 356  Bit Score: 521.26  E-value: 0e+00
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  14 FMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVC 93
Cdd:MTH00156    4 INNSLIDLPTPSNISYWWNFGSLLGLCLMIQIITGLFLAMHYTADIELAFSSVIHICRDVNYGWLLRTLHANGASFFFIC 83

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  94 LYMHVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNP 173
Cdd:MTH00156   84 IYLHIGRGIYYGSYKLKHTWMSGVIILFLVMATAFLGYVLPWGQMSFWGATVITNLLSAIPYLGTDLVQWIWGGFSVDNA 163

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 174 TLVRFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDS 253
Cdd:MTH00156  164 TLTRFFTFHFLLPFIILAMVMIHLLFLHQTGSNNPLGLNSNIDKIPFHPYFTFKDLVGFIIMLMLLILLTLINPYLLGDP 243

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 254 ENFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLFTGELKLGGWFIFW-RAMFWCFVVIFI 332
Cdd:MTH00156  244 ENFIPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSILILMILPFTNKSKFRGNQFYPInKILFWIFVNIVI 323

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2044067328 333 LLTWIGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00156  324 LLTWIGARPVEEPYILTGQILTILYFLYFIIN 355
CYTB MTH00145
cytochrome b; Provisional
 18-367 5.79e-172

cytochrome b; Provisional


Pssm-ID: 177203 [Multi-domain]  Cd Length: 379  Bit Score: 484.02  E-value: 5.79e-172
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00145   19 LYDLPAPVNLSIWWNFGSLLGLCLGIQILTGLFLSMHYTAHVDLAFSSVIHIMRDVNYGWLLRSLHANGASFFFICIYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00145   99 IGRGLYYGSYLMQHTWNIGVTLLLLSMGTAFLGYVLPWGQMSFWGATVITNLLSAIPYVGKMLVEWVWGGFSVGNATLKR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFI 257
Cdd:MTH00145  179 FFSLHFLLPFVILGLSVLHLLFLHETGSNNPLGLDSDGDKVPFHPYYTIKDLVGFVVLLFLLVFLVLFFPNLLGDPENFI 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 258 SANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVC-SLFTGELKLGGWFIFWRAMFWCFVVIFILLTW 336
Cdd:MTH00145  259 PANPMVTPVHIQPEWYFLFAYAILRSIPNKLGGVIALVMSIVILFFLpLLHVGKFRSLSFYPLNQVLFWIFVGNFFILTW 338

                         330       340       350
                  ....*....|....*....|....*....|.
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYFLVFVLMGSV 367
Cdd:MTH00145  339 IGACPVEEPYETIGQVFTVLYFLFFLILPLV 369
CYTB MTH00191
cytochrome b; Provisional
 8-365 1.64e-168

cytochrome b; Provisional


Pssm-ID: 177239 [Multi-domain]  Cd Length: 365  Bit Score: 474.79  E-value: 1.64e-168
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328   8 NLLVGGFMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGG 87
Cdd:MTH00191    5 HPLLKIVNGSLIDLPSPSNISYWWNFGSLLGLCLIIQILTGLFLAMHYTADISLAFSSVVHICRDVNYGWLLRNIHANGA 84

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  88 SLFFVCLYMHVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGG 167
Cdd:MTH00191   85 SFFFICIYLHIGRGLYYGSYLNKETWNVGVILLILSMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGDDLVQWLWGG 164

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 168 FSVGNPTLVRFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYP 247
Cdd:MTH00191  165 FSVDNATLTRFFTFHFLLPFLIAALSLIHLLFLHETGSNNPLGLNSDSDKIPFHPYFSYKDILGFFILLFLLLFLVLFSP 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 248 NALGDSENFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLF-TGELKLGGWFIFWRAMFWC 326
Cdd:MTH00191  245 NLLGDPENFIPANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVLALVMSILVLFLLPLLhTSKQRSNTFRPLTQVVFWL 324

                         330       340       350
                  ....*....|....*....|....*....|....*....
gi 2044067328 327 FVVIFILLTWIGARPVEDPYVMIGQGLTVLYFLVFVLMG 365
Cdd:MTH00191  325 WVANFILLTWLGGQPVEDPFILLGQISSFLYFFLFLLLF 363
CYTB MTH00119
cytochrome b; Provisional
 18-364 6.16e-167

cytochrome b; Provisional


Pssm-ID: 214425 [Multi-domain]  Cd Length: 380  Bit Score: 471.31  E-value: 6.16e-167
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00119   19 LIDLPTPSNISAWWNFGSLLGLCLITQILTGLFLAMHYTADISLAFSSVAHICRDVQYGWLIRNLHANGASMFFICIYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00119   99 IGRGLYYGSYLYKETWNTGVILLLLLMATAFVGYVLPWGQMSFWGATVITNLLSAIPYIGQTLVEWIWGGFSVDNPTLTR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFI 257
Cdd:MTH00119  179 FFALHFLLPFLIAGLTLIHLLFLHETGSNNPLGLNSNTDKIPFHPYFSYKDLLGLTLMLTLLLTLALFSPNLLGDPENFT 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 258 SANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVC-SLFTGELKLGGWFIFWRAMFWCFVVIFILLTW 336
Cdd:MTH00119  259 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALAASILILFLMpFLHTSKQRSMTFRPLSQLLFWTLVANLLILTW 338

                         330       340
                  ....*....|....*....|....*...
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00119  339 IGSQPVEHPFIIIGQLASILYFTILLIL 366
CYTB MTH00016
cytochrome b; Validated
 17-365 3.10e-159

cytochrome b; Validated


Pssm-ID: 177102 [Multi-domain]  Cd Length: 378  Bit Score: 451.82  E-value: 3.10e-159
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  17 FLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYM 96
Cdd:MTH00016   18 SLVDLPAPSNLSIWWNFGSLLGLCLVIQILTGLFLSMHYTPHIDLAFSSVAHISRDVNYGWLLRNLHANGASFFFICLYL 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  97 HVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLV 176
Cdd:MTH00016   98 HIGRGIYYGSYFLMETWNIGVILLLLTMATAFLGYVLPWGQMSFWGATVITNLLSAIPYIGKMLVQWLWGGFSVDNATLT 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 177 RFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENF 256
Cdd:MTH00016  178 RFFALHFLLPFVIAALSMIHLLFLHQTGSNNPLGVNSNSDKVPFHPYYTSKDIVGFIVMLFLLLSVVLLWPNILGDPENF 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 257 ISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSL-FTGELKLGGWFIFWRAMFWCFVVIFILLT 335
Cdd:MTH00016  258 IPANPLVTPTHIKPEWYFLWAYAILRSIPNKLGGVVAMFASILILFFLPFiFKQKFRGLSFYPLNQILFWLLVSNFLLLT 337

                         330       340       350
                  ....*....|....*....|....*....|
gi 2044067328 336 WIGARPVEDPYVMIGQGLTVLYFLVFVLMG 365
Cdd:MTH00016  338 WIGGRPVEPPYEFLGQIFTVFYFFYFMINP 367
CYTB MTH00131
cytochrome b; Provisional
 18-364 6.90e-158

cytochrome b; Provisional


Pssm-ID: 177189 [Multi-domain]  Cd Length: 380  Bit Score: 448.33  E-value: 6.90e-158
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00131   18 LVDLPAPSNISVWWNFGSLLGLCLITQILTGLFLAMHYTSDISTAFSSVAHICRDVNYGWLIRNLHANGASFFFICIYLH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00131   98 IGRGLYYGSYLYKETWNIGVVLLLLVMMTAFVGYVLPWGQMSFWGATVITNLLSAVPYVGNTLVQWIWGGFSVDNATLTR 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFI 257
Cdd:MTH00131  178 FFAFHFLFPFVIAAATILHLLFLHETGSNNPLGLNSDADKISFHPYFSYKDLLGFAILLLALTSLALFSPNLLGDPDNFT 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 258 SANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLFTGELKLGGWF-IFWRAMFWCFVVIFILLTW 336
Cdd:MTH00131  258 PANPLVTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLFSILVLMVVPILHTSKQRGLTFrPLTQFLFWTLVADVLILTW 337

                         330       340
                  ....*....|....*....|....*...
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00131  338 IGGMPVEHPFIIIGQVASVLYFSLFLVL 365
CYTB MTH00074
cytochrome b; Provisional
 18-364 2.85e-155

cytochrome b; Provisional


Pssm-ID: 177145 [Multi-domain]  Cd Length: 380  Bit Score: 441.81  E-value: 2.85e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00074   19 FIDLPTPSNLSSLWNFGSLLGVCLIAQIITGLFLAMHYTADTSSAFSSVAHICRDVNYGWLMRNIHANGASFFFICIYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00074   99 IGRGLYYGSYMYKETWNIGVILLFLVMATAFVGYVLPWGQMSFWGATVITNLLSAIPYMGDTLVQWIWGGFSVDKATLTR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFI 257
Cdd:MTH00074  179 FFAFHFLLPFLIAGASIIHLLFLHETGSNNPTGLNSNPDKVPFHPYFSYKDLLGFLIMLTALALLSLFSPNLLGDPDNFT 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 258 SANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVC-SLFTGELKLGGWFIFWRAMFWCFVVIFILLTW 336
Cdd:MTH00074  259 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVLALLASILILMLIpMLHTSKQRSLMFRPLTQILFWLLVANTLILTW 338

                         330       340
                  ....*....|....*....|....*...
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00074  339 IGGQPVEDPFIEIGQAASILYFLLFIII 366
CYTB MTH00100
cytochrome b; Provisional
 18-364 4.68e-155

cytochrome b; Provisional


Pssm-ID: 177162 [Multi-domain]  Cd Length: 379  Bit Score: 441.00  E-value: 4.68e-155
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00100   18 FIDLPAPSNISSWWNFGSLLGICLILQILTGLFLAMHYTSDTTTAFSSVAHICRDVNYGWIIRYLHANGASMFFICLFLH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00100   98 VGRGLYYGSYLFLETWNIGIILLFTVMATAFMGYVLPWGQMSFWGATVITNLLSAIPYIGTTLVEWIWGGFSVDKATLTR 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFI 257
Cdd:MTH00100  178 FFAFHFILPFIITALAMVHLLFLHETGSNNPSGIPSDSDKIPFHPYYTIKDILGLLLLILTLMLLVLFSPDLLGDPDNYT 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 258 SANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLFTGELKLGGWF-IFWRAMFWCFVVIFILLTW 336
Cdd:MTH00100  258 PANPLNTPPHIKPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIIPLLHTSKQRSMMFrPLSQCLFWLLVADLLTLTW 337

                         330       340
                  ....*....|....*....|....*....
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYF-LVFVLM 364
Cdd:MTH00100  338 IGGQPVEHPFIIIGQLASILYFlIILILM 366
CYTB MTH00034
cytochrome b; Validated
 18-363 2.21e-153

cytochrome b; Validated


Pssm-ID: 177109 [Multi-domain]  Cd Length: 379  Bit Score: 436.83  E-value: 2.21e-153
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00034   18 LIDLPSPSNLSIWWNFGSLLGLCLIIQIITGIFLAMHYTADISLAFSSVSHICRDVNYGWLLRNIHANGASLFFICLYFH 97

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00034   98 IGRGLYYGSYVNIETWNIGVILFLLTMLTAFVGYVLPWGQMSFWAATVITNLVSAVPYIGTDIVQWIWGGFSVDNATLTR 177

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFI 257
Cdd:MTH00034  178 FFAFHFLFPFIIAALSIIHLLFLHQTGSNNPTGLNSNYDKVPFHTYFTTKDLVGFLILFAALSSLALLFPTALNDPENFI 257

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 258 SANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLF-TGELKLGGWFIFWRAMFWCFVVIFILLTW 336
Cdd:MTH00034  258 PANPLVTPPHIQPEWYFLFAYAILRSIPNKLGGVIALVAAILVLFLVPILhTSNNQSSTFRPLSQIAFWLLIATFFILTW 337

                         330       340
                  ....*....|....*....|....*..
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYFLVFVL 363
Cdd:MTH00034  338 IGSQPVEYPFILLGQVASVLYFSLFLF 364
CYTB MTH00022
cytochrome b; Validated
 2-364 3.59e-145

cytochrome b; Validated


Pssm-ID: 164595 [Multi-domain]  Cd Length: 379  Bit Score: 416.02  E-value: 3.59e-145
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328   2 MSGKSENLLVGGFMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHF 81
Cdd:MTH00022    1 MPLRKENPLLSIVNGFLVDLPSPSNISYLWNFGSLLGLCLVIQIITGCFLSMHYCSDVSLAFASVGHIMRDVNYGFLLRY 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  82 IHANGGSLFFVCLYMHVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLV 161
Cdd:MTH00022   81 LHANGASLFFLCLYIHIGRGLYYGGYLKFHVWNVGVVIFLLTMATAFMGYVLPWGQMSFWGATVITNLLSAIPYVGTDIV 160

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 162 QWVWGGFSVGNPTLVRFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLF 241
Cdd:MTH00022  161 QWVWGGFSVSNATLNRFFSLHFLFPFILAFLVIVHLIYLHVDGSNNPIGLNSSVDKVSFHVYYTSKDWYGIVVLFFLLSF 240

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 242 VVLFYPNALGDSENFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCS-LFTGELKLGGWFIFW 320
Cdd:MTH00022  241 IVYFAPNLLGDPENFIQANSLVTPVHIQPEWYFLFAYAILRSIPNKLGGVVAMFFSILILFFLPlLHTSWLRGLTFRPLG 320

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....
gi 2044067328 321 RAMFWCFVVIFILLTWIGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00022  321 RMAFWFLIVDFILLTWIGSQVVEEPFILIGQLLSFFYFFYFLVL 364
CYTB MTH00053
cytochrome b; Provisional
 5-364 5.15e-138

cytochrome b; Provisional


Pssm-ID: 164624 [Multi-domain]  Cd Length: 381  Bit Score: 397.92  E-value: 5.15e-138
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328   5 KSENLLVGGFMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHA 84
Cdd:MTH00053    6 RKENPVISLVNSMFIDLPSPSNISYLWNFGSLLGFCLIIQIITGIFLAMHYCADVNLAFSSVAHITRDVNYGFILRYLHA 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  85 NGGSLFFVCLYMHVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWV 164
Cdd:MTH00053   86 NGASMFFLCVYFHIGRGIYYGSYTKIIVWNVGVLIFLLMILTAFIGYVLPWGQMSFWAATVITNLLSAIPYVGDDIVRWV 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 165 WGGFSVGNPTLVRFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVL 244
Cdd:MTH00053  166 WGGFSVSNATLNRFYSLHYLLPFILAGLALVHLIALHEDGSNNPIGVRSDIDKIPFHYYYVLKDLYGAVILLIILSIIVF 245

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 245 FYPNALGDSENFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCS-LFTGELKLGGWFIFWRAM 323
Cdd:MTH00053  246 LFPYSLGDAENFKQANPLVTPVHIKPEWYFLFAYAILRSIPNKLGGVVALVFSILVLFFLPyLHKSRFRGLSFRPLSKIL 325

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|.
gi 2044067328 324 FWCFVVIFILLTWIGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00053  326 FWFLVGDFFLLTWIGGQPVEEPYILIGQIASIFYFAYFLIL 366
CYTB MTH00224
cytochrome b; Provisional
 18-363 4.32e-135

cytochrome b; Provisional


Pssm-ID: 164767 [Multi-domain]  Cd Length: 379  Bit Score: 390.44  E-value: 4.32e-135
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00224   19 LIDLPAPNNISIWWNYGSLLGLCLVIQVLTGLFLSMHYAPNIEMAFSSVAHISRDVNYGWLLRSIHANGASMFFLFIYLH 98

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00224   99 VGRGLYYGSFNLSETWNIGVILFILTMATAFLGYVLPWGQMSFWGATVITNLFSAIPYIGKDLVEWIWGGFAVDNATLNR 178

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFI 257
Cdd:MTH00224  179 FFSFHFLLPFAIMGATILHIMFLHQTGSNNPIGINADSARIPFHPYYSIKDALGYLIAILLLSLMVLFEPNLFTDPENFL 258

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 258 SANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLFTGELKLGGWFI-FWRAMFWCFVVIFILLTW 336
Cdd:MTH00224  259 MANPLVTPIHIKPEWYFLWMYAILRSIPNKLGGVVALFAAILILFILPLTSVMNKRSLPFYpLNQLLFWLLVTSWAILTW 338

                         330       340
                  ....*....|....*....|....*..
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYFLVFVL 363
Cdd:MTH00224  339 IGGRPVEDPFEGIGQVFTILYFSYFII 365
CYTB MTH00086
cytochrome b; Provisional
 17-364 2.76e-105

cytochrome b; Provisional


Pssm-ID: 177151 [Multi-domain]  Cd Length: 355  Bit Score: 313.80  E-value: 2.76e-105
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  17 FLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYM 96
Cdd:MTH00086    6 LVVTLPSSKSLSYWWNFGSMLGMVLVFQILTGTFLAFYYTADSSMAFSSVQYIMYEVNFGWLFRIFHFNGASLFFIFLYL 85

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  97 HVGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLV 176
Cdd:MTH00086   86 HIFKGLFMMSYRLKKVWISGLTIYLLVMMEAFMGYVLVWAQMSFWAAVVITSLLSVIPIWGPSIVMWIWGGFGVSSATLK 165

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 177 RFFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFvVLFYPNALGDSENF 256
Cdd:MTH00086  166 FFFVLHFLLPWGLLVLVLFHLIFLHSTGSTSSLYCHGDYDKICFGPEYWNKDAYNIIFWLVFIIF-SLFYPFNLGDPEMF 244

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 257 ISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCSLFTGELKLGGwfIFWRAMFWCFVVIFILLTW 336
Cdd:MTH00086  245 IEADPMMSPVHIVPEWYFLFAYAILRAIPNKVLGVIALLMSIVVFYFFIFVNNYTSCLN--KLNKFLVFSFIVVNVILSW 322

                         330       340
                  ....*....|....*....|....*...
gi 2044067328 337 IGARPVEDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00086  323 LGQCLVEYPFLFLSQIFSFIYFFLILLM 350
CYTB MTH00033
cytochrome b; Provisional
 18-364 2.58e-101

cytochrome b; Provisional


Pssm-ID: 133672 [Multi-domain]  Cd Length: 383  Bit Score: 304.55  E-value: 2.58e-101
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00033   15 IIDLPTPSNISYWWNFGSLLCLCLGIQILTGVLLAMHYRSDVSLAFSSVAHIVRDVNYGWILRYVHANGASLFFICVYCH 94

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00033   95 IGRGLYYGGYSRVLTWIVGVLIFFIMMLTAFIGYVLPWGQMSFWAATVITNLVSAIPSVGGSIVEWIWGGFSVSNCTLNR 174

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCwVLGGLLFVVLFYP---NALGDSE 254
Cdd:MTH00033  175 FFSLHYLLPFVLVGLVLAHLLTLHEKGSNEPLGLVGLSDRTAFHVYFTIKDILGFL-ILFGVFVIIGIEPrieTLLQDPE 253

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 255 NFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILI-LFVCSLFTGELKLGGWFIFWRAMFWCFVVIFIL 333
Cdd:MTH00033  254 NFIQANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALFASILVlLLMPILDRSKIRSLTFNPTGKFFFWFIVGDFII 333

                         330       340       350
                  ....*....|....*....|....*....|..
gi 2044067328 334 LTWIGARPV-EDPYVMIGQGLTVLYFLVFVLM 364
Cdd:MTH00033  334 LTWIGSAPAgADPYVLIGRIATIFYFGYFLVL 365
QcrB/PetB COG1290
Cytochrome b subunit of the bc complex [Energy production and conversion];
11-363 5.58e-90

Cytochrome b subunit of the bc complex [Energy production and conversion];


Pssm-ID: 440901 [Multi-domain]  Cd Length: 393  Bit Score: 275.90  E-value: 5.58e-90
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  11 VGGFMAFLVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLF 90
Cdd:COG1290    20 LASLVREHLEYPFPKNWNFSYWFGELALYSFVIQILTGIFLTMYYKPSASEAFASVEYIMRDVPGGWLIRYMHHWGASLF 99

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  91 FVCLYMHVGRGLYYGSY-----VlfhVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVW 165
Cdd:COG1290   100 FAAVYLHMFRGFFYGAYkkpreL---NWIIGVLLLLLTMAEAFTGYSLPWDQLSYWGARVITGLFGAIPVIGTWLVTWLF 176

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 166 GGFSVGNPTLVRFFAF-HFLFPFLIVGLVLVHLLFLHETGSSMPLG----LNSDVLSVEFHPYFSVSDLYGLCWVLGGLL 240
Cdd:COG1290   177 GGEFPGDATLNRFFALhVLLLPALLLALVVLHLWLLHRHGHNNPPGperkKTEKVDGVPFHPYYTVKDGFGFFVFLGVFA 256

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 241 FVVLFYPNalGDSENFISANPLVTPEHIQPEWYFLFAYAILRSIP--NKLGGVVALVMSILILFVCSLF-TGELKLGGWF 317
Cdd:COG1290   257 LLAFFFPI--NPPPNYGPANPLATPAHIQPDWYFLPFYGILRAIPgsAKLGGVIAMGLAILVLFLLPFLdRSPVRSPRYR 334

                         330       340       350       360
                  ....*....|....*....|....*....|....*....|....*.
gi 2044067328 318 IFWRAMFWCFVVIFILLTWIGARPveDPYVMIGQGLTVLYFLVFVL 363
Cdd:COG1290   335 PVRTALGVAFIVFFIVLTILGANP--PIATLLGSINTVTYFAFFLI 378
CYTB MTH00046
cytochrome b; Validated
 18-363 8.62e-75

cytochrome b; Validated


Pssm-ID: 177121 [Multi-domain]  Cd Length: 355  Bit Score: 235.65  E-value: 8.62e-75
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:MTH00046    9 LIDLPTNYSLNYYWCSGFVLSVFMVIQVLTGVLLSLLYVADSLCSFFCVMSLSNDSFFTWCVRYWHIWGVNVLFILLFIH 88

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:MTH00046   89 MGRALYYSSYSKKGVWNVGFILYLLVMVEAFLGYILPWHQMSYWAATVLTSIVDSVPIVGSLVYKYIVGGFSVTGVTLVR 168

                         170       180       190       200       210       220       230       240
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 178 FFAFHFLFPFLIVGLVLVHLLFLHETGSSMPLGLN---SDVlsVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSE 254
Cdd:MTH00046  169 VFSVHICLGFVILGLMVVHLFYLHKSGSSNPLFSSngySDV--VYFHSYFTVKDLFLFMVVCSLLVFWLFVSPDLVLDIE 246

                         250       260       270       280       290       300       310       320
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 255 NFISANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVaLVMSILILFVCSLFTGElklGGWFIFWRAMFWCFVVIFILL 334
Cdd:MTH00046  247 AYLEADPLVTPVSIKPEWYFLAFYAMLRSINSKIGGLV-LVLSFLFFLWVPTFNGS---SVYSVWRQVNFWLIVSLFFSL 322

                         330       340
                  ....*....|....*....|....*....
gi 2044067328 335 TWIGARPVEDPYVMIGQGLTVLYFLVFVL 363
Cdd:MTH00046  323 SYLGGCHPEYPYLLISQLFSVLMVLLLFI 351
Cytochrome_b_N cd00284
Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 18-206 1.38e-63

Cytochrome b (N-terminus)/b6/petB: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal portion of cytochrome b is described in a separate CD.


Pssm-ID: 238176  Cd Length: 200  Bit Score: 201.44  E-value: 1.38e-63
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:cd00284    10 LIDLPPPSNISYWWNFGSLLGTCLVIQILTGVFLAMHYTPDVTLAFSSVQYIMRDVNFGWLIRSLHANGASMFFLMLYLH 89

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYGSYVLFH--VWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTL 175
Cdd:cd00284    90 IFRGLYYGSYKKPRelTWVIGVILLLLTMATAFMGYVLPWGQMSYWGATVITNLFSAIPVIGITLVEWLWGGFSVDNATL 169

                         170       180       190
                  ....*....|....*....|....*....|.
gi 2044067328 176 VRFFAFHFLFPFLIVGLVLVHLLFLHETGSS 206
Cdd:cd00284   170 TRFFALHFLLPFIIAVIVILHLLFLHEQGSS 200
Cytochrome_B pfam00033
Cytochrome b/b6/petB;
18-177 2.29e-56

Cytochrome b/b6/petB;


Pssm-ID: 306530  Cd Length: 189  Bit Score: 182.58  E-value: 2.29e-56
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  18 LVELPTPSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMH 97
Cdd:pfam00033   1 VVSLPVPSNLSIWYNFGSLLGLCLAVQILTGVFLAFYYTPDVTLAFLSVQYIMRDVNFGWLIRSVHANGASMFFLMLYLH 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  98 VGRGLYYG--SYVLFHVWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTL 175
Cdd:pfam00033  81 IFRGLYYGgfSYPRELTWVIGVILLVLTMSTAFIGYVLPWGQMSYWGATVITNLLSAIPVIGDTLVEWIWGSFSVDQATL 160


                  ..
gi 2044067328 176 VR 177
Cdd:pfam00033 161 TR 162
cytochrome_b_C cd00290
Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit ...
 208-351 1.30e-37

Cytochrome b(C-terminus)/b6/petD: Cytochrome b is a subunit of cytochrome bc1, an 11-subunit mitochondrial respiratory enzyme. Cytochrome b spans the mitochondrial membrane with 8 transmembrane helices (A-H) in eukaryotes. In plants and cyanobacteria, cytochrome b6 is analogous to eukaryote cytochrome b, containing two chains: helices A-D are encoded by the petB gene and helices E-H are encoded by the petD gene in these organisms. Cytochrome b/b6 contains two bound hemes and two ubiquinol/ubiquinone binding sites. The C-terminal domain is involved in forming the ubiquinol/ubiquinone binding sites, but not the heme binding sites. The N-terminal portion of cytochrome b, which contains both heme binding sites, is described in a separate CD.


Pssm-ID: 238179 [Multi-domain]  Cd Length: 147  Bit Score: 132.38  E-value: 1.30e-37
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 208 PLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVLFYPNALGDSENFISANPLVTPEHIQPEWYFLFAYAILRSIPNK 287
Cdd:cd00290     2 PLGLASDMDKISFHPYFWPKDLLGAFPILIIFMILVFYAPNLLGHPDNGIPANPLATPLHILPEWYFLPVYAILRAIPNK 81

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....
gi 2044067328 288 LGGVVALVMSILILFVCSLFTGELKLGGWFIFWRAMFWCFVVIFILLTWIGARPVEDPYVMIGQ 351
Cdd:cd00290    82 LLGVLAMAASILSLFLVPFLENSNKRSQFRPLRPTAFWVFLAGTLVLGWLGIQPVEYPFSLILQ 145
Cytochrom_B_C pfam00032
Cytochrome b(C-terminal)/b6/petD;
259-357 1.82e-34

Cytochrome b(C-terminal)/b6/petD;


Pssm-ID: 459640 [Multi-domain]  Cd Length: 101  Bit Score: 122.59  E-value: 1.82e-34
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 259 ANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVMSILILFVCS-LFTGELKLGGWFIFWRAMFWCFVVIFILLTWI 337
Cdd:pfam00032   2 ANPLVTPAHIVPEWYFLPFYAILRSIPSKLGGVIAMGAAILILFLLPwLDRSPVRSIRYRPLFKIFFWLFVVDFVVLGWL 81

                          90       100
                  ....*....|....*....|
gi 2044067328 338 GARPVEDPYVMIGQGLTVLY 357
Cdd:pfam00032  82 GKQPPTGPYTLLGQIATVYY 101
PRK03735 PRK03735
cytochrome b6; Provisional
 33-177 7.97e-22

cytochrome b6; Provisional


Pssm-ID: 179639  Cd Length: 223  Bit Score: 92.47  E-value: 7.97e-22
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  33 FGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMHVGRGLYYGSYVLFH- 111
Cdd:PRK03735   44 FGGLTFFCFVIQILSGMFLTMYYVPDIKNAYESVYYLQNEVAFGWIVRGMHHWGASLVIVMMFLHTLRVFFTGGYKKPRe 123

                          90       100       110       120       130       140
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*..
gi 2044067328 112 -VWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:PRK03735  124 lNWVVGVLIFFVTVGLGFTGYLLPWDQKAYFATKVGSQIAEAIPVIGDFIKTLLRGGEIVGAQTLTR 190
Cytochrom_B_N_2 pfam13631
Cytochrome b(N-terminal)/b6/petB;
88-252 1.58e-21

Cytochrome b(N-terminal)/b6/petB;


Pssm-ID: 433364  Cd Length: 169  Bit Score: 90.38  E-value: 1.58e-21
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  88 SLFFVCLYMHVGRGLYYGSYVLFH--VWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVW 165
Cdd:pfam13631   1 YIFIAAIYVHMLRIFFTGAYRKPRelNWIIGVLLLLLTLGEGFTGYSLPDDLLSGTGLRIGLGILSSIPVVGTWLVWLLF 80

                          90       100       110       120       130       140       150       160
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328 166 GGFSVGNPTLVRFFAF-HFLFPFLIVGLVLVHLLFLHETGSSMPLGLNSDVLSVEFHPYFSVSDLYGLCWVLGGLLFVVL 244
Cdd:pfam13631  81 GGPFPGTATIPRFYALhILLLPGLILALIVAHLLLVEKHGQFPPPGTEKNVVGVPFWPVFAVKMLLFFLITVALLIGLAQ 160


                  ....*...
gi 2044067328 245 FYPNALGD 252
Cdd:pfam13631 161 INPIWLGG 168
petB CHL00070
cytochrome b6
 24-177 4.59e-16

cytochrome b6


Pssm-ID: 177009  Cd Length: 215  Bit Score: 76.30  E-value: 4.59e-16
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 2044067328  24 PSSISYMWNFGSMLAFCLGLQILTGLFLAMHYSAHVDTAFFSVVHLSRDVNYGWLLHFIHANGGSLFFVCLYMHVGRGLY 103
Cdd:CHL00070   27 PPHVNIFYCLGGITLTCFLVQVATGFAMTFYYRPTVTEAFASVQYIMTEVNFGWLIRSVHRWSASMMVLMMILHVFRVYL 106

                          90       100       110       120       130       140       150
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*.
gi 2044067328 104 YGSYVLFH--VWSSGISILLITMLTAFLGYVLPWGQMSFWGATVITNLLSAVPYWGVDLVQWVWGGFSVGNPTLVR 177
Cdd:CHL00070  107 TGGFKKPRelTWVTGVVLAVLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTR 182
PetD COG5679
Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion]; ...
 259-295 4.37e-08

Cytochrome b6f complex subunit IV, PetD, 17 kd cytochrome b [Energy production and conversion];


Pssm-ID: 444393 [Multi-domain]  Cd Length: 161  Bit Score: 52.10  E-value: 4.37e-08
                          10        20        30
                  ....*....|....*....|....*....|....*..
gi 2044067328 259 ANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALV 295
Cdd:COG5679    67 ADPFATPLEILPEWYLYPVFQILRVVPNKLLGIVMMA 103
petD CHL00058
cytochrome b6/f complex subunit IV
 247-295 2.24e-07

cytochrome b6/f complex subunit IV


Pssm-ID: 176998  Cd Length: 160  Bit Score: 50.00  E-value: 2.24e-07
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*....
gi 2044067328 247 PNALGDSenfisANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALV 295
Cdd:CHL00058   59 PSMIGEP-----ADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMA 102
cytb6/f_IV TIGR01156
cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f ...
 259-296 2.02e-06

cytochrome b6/f complex subunit IV; This model describes the subunit IV of the cytochrome b6/f complex. The cyt b6/f complex is central to the functions of the oxygenic phosynthetic electron transport in cyanobacteria and its equivalents in algae and higher plants. Energetically, on the redox scale the cytb6/f complex is placed below the other components - Q(A); Q(B) of the photosystem II in the Z-scheme, along the pathway of the electron transport. The complex is made of the following subunits: cytochrome f; cytochrome b6; Rieske 2Fe-2S; and subunits IV; V; VI; VII. Subunit IV is one of the principal subunits for the binding of the redox prosthetic groups. Each monomer of the complex contains a molecule of chlorophyll a and beta-carotene. [Energy metabolism, Electron transport, Energy metabolism, Photosynthesis]


Pssm-ID: 130224 [Multi-domain]  Cd Length: 159  Bit Score: 47.10  E-value: 2.02e-06
                          10        20        30
                  ....*....|....*....|....*....|....*...
gi 2044067328 259 ANPLVTPEHIQPEWYFLFAYAILRSIPNKLGGVVALVM 296
Cdd:TIGR01156  66 ANPFATPLEILPEWYFYPVFQILRTVPNKLLGVLLMAA 103
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
Help | Disclaimer | Write to the Help Desk
NCBI | NLM | NIH