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Conserved domains on  [gi|1864375256|ref|YP_009880536|]
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DNA primase [Ruegeria phage vB_RpoP-V13]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PriCT_1 super family cl07362
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 667-728 1.97e-03

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


The actual alignment was detected with superfamily member pfam08708:

Pssm-ID: 447340  Cd Length: 64  Bit Score: 37.28  E-value: 1.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1864375256 667 FLNNMDIGSRNNTLLNYAMMLKDAGASFEEVEKKTLDLNKRSYAPLKQDELYSTVlKSVGSK 728
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGIDRESVLALLHALNSNLEPPLDESEVEKTV-KSVYRY 61
 
Name Accession Description Interval E-value
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 667-728 1.97e-03

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 37.28  E-value: 1.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1864375256 667 FLNNMDIGSRNNTLLNYAMMLKDAGASFEEVEKKTLDLNKRSYAPLKQDELYSTVlKSVGSK 728
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGIDRESVLALLHALNSNLEPPLDESEVEKTV-KSVYRY 61
 
Name Accession Description Interval E-value
PriCT_1 pfam08708
Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of ...
 667-728 1.97e-03

Primase C terminal 1 (PriCT-1); This alpha helical domain is found at the C terminal of primases.


Pssm-ID: 430166  Cd Length: 64  Bit Score: 37.28  E-value: 1.97e-03
                          10        20        30        40        50        60
                  ....*....|....*....|....*....|....*....|....*....|....*....|..
gi 1864375256 667 FLNNMDIGSRNNTLLNYAMMLKDAGASFEEVEKKTLDLNKRSYAPLKQDELYSTVlKSVGSK 728
Cdd:pfam08708   1 TLGPVASGGRNNALFRLAGALARRGIDRESVLALLHALNSNLEPPLDESEVEKTV-KSVYRY 61
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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