4V4B: Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map

PDB ID: 4V4BDownload
MMDB ID: 170934
PDB Deposition Date: 2004/1/6
Updated in MMDB: 2021/03
Experimental Method:
electron microscopy
Resolution: 11.7  Å
Source Organism:
Similar Structures:
Entry 1S1I is obsolete, it has been replaced with 4V4B.
Molecular Components in 4V4B
Label Count Molecule
Proteins (44 molecules)
1
Elongation Factor 2
Molecule annotation
1
40S Ribosomal Protein S0-a
Molecule annotation
1
40S Ribosomal Protein S3
Molecule annotation
1
40S Ribosomal Protein S9-a
Molecule annotation
1
40S Ribosomal Protein S2
Molecule annotation
1
40S Ribosomal Protein S5
Molecule annotation
1
40S Ribosomal Protein S22
Molecule annotation
1
40S Ribosomal Protein S16
Molecule annotation
1
40S Ribosomal Protein S20
Molecule annotation
1
40S Ribosomal Protein S14-a
Molecule annotation
1
40S Ribosomal Protein S23
Molecule annotation
1
40S Ribosomal Protein S18
Molecule annotation
1
40S Ribosomal Protein S29-b
Molecule annotation
1
40S Ribosomal Protein S13
Molecule annotation
1
40S Ribosomal Protein S11
Molecule annotation
1
40S Ribosomal Protein S15
Molecule annotation
1
60S Ribosomal Protein L1
Molecule annotation
1
60S Ribosomal Protein L2
Molecule annotation
1
60S Ribosomal Protein L3
Molecule annotation
1
60S Ribosomal Protein L4-b
Molecule annotation
1
60S Ribosomal Protein L5
Molecule annotation
1
60S Ribosomal Protein L7-a
Molecule annotation
1
60S Ribosomal Protein L8-a
Molecule annotation
1
60S Ribosomal Protein L9-a
Molecule annotation
1
60S Ribosomal Protein L10
Molecule annotation
1
60S Ribosomal Protein L11
Molecule annotation
1
60S Ribosomal Protein L12
Molecule annotation
1
60S Ribosomal Protein L15-a
Molecule annotation
1
60S Ribosomal Protein L16-a
Molecule annotation
1
60S Ribosomal Protein L17-a
Molecule annotation
1
60S Ribosomal Protein L18
Molecule annotation
1
60S Ribosomal Protein L19
Molecule annotation
1
60S Ribosomal Protein L21-a
Molecule annotation
1
60S Ribosomal Protein L23
Molecule annotation
1
60S Ribosomal Protein L24-a
Molecule annotation
1
60S Ribosomal Protein L25
Molecule annotation
1
60S Ribosomal Protein L26-a
Molecule annotation
1
60S Ribosomal Protein L28
Molecule annotation
1
60S Ribosomal Protein L32
Molecule annotation
1
60S Ribosomal Protein L31
Molecule annotation
1
60S Ribosomal Protein L35
Molecule annotation
1
60S Ribosomal Protein L37-a
Molecule annotation
1
60S Ribosomal Protein L42
Molecule annotation
1
60S Ribosomal Protein L43
Molecule annotation
Nucleotides(3 molecules)
1
18S Ribosomal RNA
Molecule annotation
1
5.8s/25s Ribosomal RNA
Molecule annotation
1
5S Ribosomal RNA
Molecule annotation
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303