3KCG: Crystal structure of the antithrombin-factor IXa-pentasaccharide complex

PDB ID: 3KCGDownload
MMDB ID: 208809
PDB Deposition Date: 2009/10/21
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 1.7  Å
Source Organism:
Similar Structures:
Biological Unit for 3KCG: trimeric; determined by author and by software (PISA)
Molecular Components in 3KCG
Label Count Molecule
Proteins (3 molecules)
1
Coagulation Factor IXA Light Chain
(Gene symbol: F9)
Molecule annotation
1
Coagulation Factor IXA Heavy Chain
(Gene symbol: F9)
Molecule annotation
1
Antithrombin-iii
(Gene symbol: SERPINC1)
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
4
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
alpha-L-fucopyranosealpha-L-fucopyranose
3
1
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
methyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranosidemethyl 2,3,6-tri-O-sulfo-alpha-D-glucopyranoside
5
1
3-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid3-O-methyl-2-O-sulfo-alpha-L-idopyranuronic acid
6
1
2,3,6-tri-O-sulfo-alpha-D-glucopyranose2,3,6-tri-O-sulfo-alpha-D-glucopyranose
7
1
2,3-di-O-methyl-beta-D-glucopyranuronic acid2,3-di-O-methyl-beta-D-glucopyranuronic acid
8
1
3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose3,4-di-O-methyl-2,6-di-O-sulfo-alpha-D-glucopyranose
9
1
CALCIUM IONCALCIUM ION
10
2
(4S)-2-METHYL-2,4-PENTANEDIOL(4S)-2-METHYL-2,4-PENTANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303