3OAX: Crystal structure of bovine rhodopsin with beta-ionone

PDB ID: 3OAXDownload
MMDB ID: 88067
PDB Deposition Date: 2010/8/5
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.6  Å
Source Organism:
Similar Structures:
Biological Unit for 3OAX: monomeric; determined by author
Molecular Components in 3OAX
Label Count Molecule
Protein (1 molecule)
1
Rhodopsin
(Gene symbol: RHO)
Molecule annotation
Chemicals and Non-standard biopolymers (28 molecules)
1
7
2-acetamido-2-deoxy-beta-D-glucopyranose2-acetamido-2-deoxy-beta-D-glucopyranose
2
2
beta-D-mannopyranosebeta-D-mannopyranose
3
1
alpha-D-mannopyranosealpha-D-mannopyranose
4
1
RETINALRETINAL
5
4
PALMITIC ACIDPALMITIC ACID
6
3
MERCURY (II) IONMERCURY (II) ION
7
4
ZINC IONZINC ION
8
1
(4E,6E)-hexadeca-1,4,6-triene(4E,6E)-hexadeca-1,4,6-triene
9
3
heptyl 1-thio-beta-D-glucopyranosideheptyl 1-thio-beta-D-glucopyranoside
10
1
(3E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-one(3E)-4-(2,6,6-trimethylcyclohex-1-en-1-yl)but-3-en-2-one
11
1
HEPTANE-1,2,3-TRIOLHEPTANE-1,2,3-TRIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303