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Biotechnology Information

3PIP: Crystal structure of the synergistic antibiotic pair lankamycin and lankacidin in complex with the large ribosomal subunit

PDB ID:

MMDB ID:

88849

PDB Deposition Date:

2010/11/7

Updated in MMDB:

2023/09

Experimental Method:

x-ray diffraction

Resolution:

3.45 Å

Source Organism:

Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539▼

Taxonomy	Molecule
Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	X, Y
Deinococcus radiodurans	A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, Z, 1, 2, 3, 4

Similar Structures:

Biological Unit for 3PIP: 30-meric; determined by author

Molecular Components in 3PIP
Label	Count	Molecule
Proteins (28 molecules)
A	1	50S Ribosomal Protein L2
B	1	50S Ribosomal Protein L3
C	1	50S Ribosomal Protein L4
D	1	50S Ribosomal Protein L5
E	1	50S Ribosomal Protein L6
F	1	50S Ribosomal Protein L11
G	1	50S Ribosomal Protein L13
H	1	50S Ribosomal Protein L14
I	1	50S Ribosomal Protein L15
J	1	50S Ribosomal Protein L16
K	1	50S Ribosomal Protein L17
L	1	50S Ribosomal Protein L18
M	1	50S Ribosomal Protein L19
N	1	50S Ribosomal Protein L20
O	1	50S Ribosomal Protein L21
P	1	50S Ribosomal Protein L22
Q	1	50S Ribosomal Protein L23
R	1	50S Ribosomal Protein L24
S	1	50S Ribosomal Protein L25
T	1	50S Ribosomal Protein L27
U	1	50S Ribosomal Protein L28
V	1	50S Ribosomal Protein L29
W	1	50S Ribosomal Protein L30
Z	1	50S Ribosomal Protein L32
1	1	50S Ribosomal Protein L33
2	1	50S Ribosomal Protein L34
3	1	50S Ribosomal Protein L35
4	1	50S Ribosomal Protein L36
Nucleotides(2 molecules)
X	1	Ribosomal 23S RNA
Y	1	5S Ribosomal RNA
Chemicals and Non-standard biopolymers (84 molecules)
1	1	N-[(1S,2R,3E,5E,7S,9E,11E,13S,15R,19R)-7,13-dihydroxy-1,4,10,19-tetramethyl-17,18-dioxo-16-oxabicyclo[13.2.2]nonadeca-3,5,9,11-tetraen-2-yl]-2-oxopropanamide
2	1	Lankamycin
3	73	MAGNESIUM ION
4	4	POTASSIUM ION
5	5	SODIUM ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB