3VYB: Crystal structure of methyl CpG binding domain of MBD4 in complex with the 5mCG/hmCG sequence

PDB ID: 3VYBDownload
MMDB ID: 106624
PDB Deposition Date: 2012/9/22
Updated in MMDB: 2023/11
Experimental Method:
x-ray diffraction
Resolution: 2.4  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 3VYB: trimeric; determined by author and by software (PISA)
Molecular Components in 3VYB
Label Count Molecule
Protein (1 molecule)
1
Methyl-cpg-binding Domain Protein 4
Molecule annotation
Nucleotides(2 molecules)
1
DNA (5'-d(*gp*tp*cp*ap*cp*tp*ap*cp*(5cm)p*gp*gp*ap*cp*a)-3')
Molecule annotation
1
DNA (5'-d(*gp*tp*cp*(5hc)p*gp*gp*tp*ap*gp*tp*gp*ap*cp*t)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (2 molecules)
1
1
ACETATE IONACETATE ION
2
1
1,2-ETHANEDIOL1,2-ETHANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303