National Center for
Biotechnology Information

4V7P: Recognition of the amber stop codon by release factor RF1

PDB ID:

4V7P Download

MMDB ID:

171054

PDB Deposition Date:

2010/4/29

Updated in MMDB:

2023/09

Experimental Method:

x-ray diffraction

Resolution:

3.62 Å

Source Organism:

Escherichia coli BL21(DE3)▼

Taxonomy

Molecule

Escherichia coli BL21(DE3)

AW, DW

Thermus thermophilus HB27

AA, AB, AC, AD, AE, AF, AG, AH, AI,
AJ, AK, AL, AM, AN, AO, AP, AQ,
AR, AS, AT, AU, AV, AX, BA, BB,
BC, BD, BE, BF, BG, BH, BI, BJ,
BK, BL, BM, BN, BO, BP, BQ, BR,
BS, BT, BU, BV, BW, BX, BY, BZ,
B1, B2, B3, B4, B5, CA, CB, CC,
CD, CE, CF, CG, CH, CI, CJ, CK,
CL, CM, CN, CO, CP, CQ, CR, CS,
CT, CU, CV, CW, CX, CY, CZ, C1,
C2, C3, C4, C5, DA, DB, DC, DD,
DE, DF, DG, DH, DI, DJ, DK, DL,
DM, DN, DO, DP, DQ, DR, DS, DT,
DU, DV, DX

Similar Structures:

Biological Unit for 4V7P: 55-meric; determined by author

Molecular Components in 4V7P
Label	Count	Molecule
Proteins (50 molecules)
AB	1	30S Ribosomal Protein S2
AC	1	30S Ribosomal Protein S3
AD	1	30S Ribosomal Protein S4
AE	1	30S Ribosomal Protein S5
AF	1	30S Ribosomal Protein S6
AG	1	30S Ribosomal Protein S7
AH	1	30S Ribosomal Protein S8
AI	1	30S Ribosomal Protein S9
AJ	1	30S Ribosomal Protein S10
AK	1	30S Ribosomal Protein S11
AL	1	30S Ribosomal Protein S12
AM	1	30S Ribosomal Protein S13
AN	1	30S Ribosomal Protein S14
AO	1	30S Ribosomal Protein S15
AP	1	30S Ribosomal Protein S16
AQ	1	30S Ribosomal Protein S17
AR	1	30S Ribosomal Protein S18
AS	1	30S Ribosomal Protein S19
AT	1	30S Ribosomal Protein S20
AU	1	30S Ribosomal Protein THX
AV	1	Peptide Chain Release Factor 1
BC	1	50S Ribosomal Protein L2
BD	1	50S Ribosomal Protein L3
BE	1	50S Ribosomal Protein L4
BF	1	50S Ribosomal Protein L5
BG	1	50S Ribosomal Protein L6
BH	1	50S Ribosomal Protein L9
BI	1	50S Ribosomal Protein L10
BJ	1	50S Ribosomal Protein L13
BK	1	50S Ribosomal Protein L14
BL	1	50S Ribosomal Protein L15
BM	1	50S Ribosomal Protein L16
BN	1	50S Ribosomal Protein L17
BO	1	50S Ribosomal Protein L18
BP	1	50S Ribosomal Protein L19
BQ	1	50S Ribosomal Protein L20
BR	1	50S Ribosomal Protein L21
BS	1	50S Ribosomal Protein L22
BT	1	50S Ribosomal Protein L23
BU	1	50S Ribosomal Protein L24
BV	1	50S Ribosomal Protein L25
BW	1	50S Ribosomal Protein L27
BX	1	50S Ribosomal Protein L28
BY	1	50S Ribosomal Protein L29
BZ	1	50S Ribosomal Protein L30
B1	1	50S Ribosomal Protein L31
B2	1	50S Ribosomal Protein L32
B3	1	50S Ribosomal Protein L33
B4	1	50S Ribosomal Protein L34
B5	1	50S Ribosomal Protein L35
Nucleotides(5 molecules)
AA	1	16S rRNA (1504-mer)
AW	1	P-site tRNA-fmet
AX	1	Messenger RNA (5'-r(apapupgpupap*g)-3')
BA	1	23S Ribosomal RNA
BB	1	5S Ribosomal RNA
Chemicals and Non-standard biopolymers (248 molecules)
1	246	MAGNESIUM ION
2	2	ZINC ION

* Click molecule labels to explore molecular sequence information.

Citing MMDB

Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303