5F9F: Crystal structure of RIG-I helicase-RD in complex with 24-mer blunt-end hairpin RNA

PDB ID: 5F9FDownload
MMDB ID: 135543
PDB Deposition Date: 2015/12/9
Updated in MMDB: 2023/10
Experimental Method:
x-ray diffraction
Resolution: 2.601  Å
Source Organism:
synthetic construct▼
Similar Structures:
Biological Unit for 5F9F: dodecameric; determined by author and by software (PISA)
Molecular Components in 5F9F
Label Count Molecule
Proteins (6 molecules)
6
Probable Atp-dependent RNA Helicase Ddx58
Molecule annotation
Nucleotides(6 molecules)
6
RNA (5'-r(*gp*ap*ap*up*ap*up*ap*ap*up*ap*gp*up*gp*ap*up*ap*up*up*ap*up*ap*up*up*c)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (29 molecules)
1
6
ZINC IONZINC ION
2
6
MAGNESIUM IONMAGNESIUM ION
3
4
TRIFLUOROETHANOLTRIFLUOROETHANOL
4
13
(R,R)-2,3-BUTANEDIOL(R,R)-2,3-BUTANEDIOL
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303