6A5U: RNA polymerase II elongation complex stalled at SHL(-1) of the nucleosome, with foreign DNA, tilt conformation

PDB ID: 6A5UDownload
MMDB ID: 167140
PDB Deposition Date: 2018/6/25
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 7.6  Å
Source Organism:
Komagataella phaffii GS115
Similar Structures:
Biological Unit for 6A5U: 25-meric; determined by author
Molecular Components in 6A5U
Label Count Molecule
Proteins (20 molecules)
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
RNA Polymerase II Third Largest Subunit B44, Part of Central Core
Molecule annotation
1
RNA Polymerase II Subunit B32
Molecule annotation
1
RNA Polymerase Subunit Abc27, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase Subunit Abc23, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase II Subunit
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
RNA Polymerase Subunit Abc10-beta, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase II Subunit B12.5
Molecule annotation
1
RNA Polymerase Subunit Abc10-alpha
Molecule annotation
2
Histone H3.3
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2a, Histone H2A Type 1-b/e
Molecule annotation
2
Histone H2b, Histone H2B Type 1-J
Molecule annotation
Nucleotides(5 molecules)
1
RNA (5'-r(p*gp*gp*up*gp*up*cp*up*up*gp*gp*g)-3')
Molecule annotation
1
DNA (198-mer)
Molecule annotation
1
DNA (198-mer)
Molecule annotation
1
DNA (40-mer)
Molecule annotation
1
DNA (40-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (9 molecules)
8
ZINC ION (Link to PubChem not yet available)ZINC ION
1
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
* Click molecule labels to explore molecular sequence information.

Citing MMDB