6GSM: Structure of a partial yeast 48S preinitiation complex in open conformation

PDB ID: 6GSMDownload
MMDB ID: 218241
PDB Deposition Date: 2018/6/14
Updated in MMDB: 2022/07
Experimental Method:
electron microscopy
Resolution: 5.15  Å
Source Organism:
Saccharomyces cerevisiae S288C
Similar Structures:
Biological Unit for 6GSM: 47-meric; determined by author
Molecular Components in 6GSM
Label Count Molecule
Proteins (44 molecules)
1
40S Ribosomal Protein S0
Molecule annotation
1
40S Ribosomal Protein S1
Molecule annotation
1
Klla0f09812p
Molecule annotation
1
Klla0d08305p
Molecule annotation
1
40S Ribosomal Protein S4
Molecule annotation
1
Klla0d10659p
Molecule annotation
1
40S Ribosomal Protein S6
Molecule annotation
1
40S Ribosomal Protein S7
Molecule annotation
1
40S Ribosomal Protein S8
Molecule annotation
1
Klla0e23673p
Molecule annotation
1
Klla0b08173p
Molecule annotation
1
Klla0a10483p
Molecule annotation
1
40S Ribosomal Protein S12
Molecule annotation
1
Klla0f18040p
Molecule annotation
1
40S Ribosomal Protein S14
Molecule annotation
1
Klla0f07843p
Molecule annotation
1
40S Ribosomal Protein S16
Molecule annotation
1
Klla0b01474p
Molecule annotation
1
Klla0b01562p
Molecule annotation
1
Klla0a07194p
Molecule annotation
1
Klla0f25542p
Molecule annotation
1
40S Ribosomal Protein S21
Molecule annotation
1
40S Ribosomal Protein S22
Molecule annotation
1
Klla0b11231p
Molecule annotation
1
40S Ribosomal Protein S24
Molecule annotation
1
Klla0b06182p
Molecule annotation
1
40S Ribosomal Protein S26
Molecule annotation
1
40S Ribosomal Protein S27
Molecule annotation
1
40S Ribosomal Protein S28
Molecule annotation
1
40S Ribosomal Protein S29
Molecule annotation
1
40S Ribosomal Protein S30
Molecule annotation
1
Ubiquitin-40s Ribosomal Protein S27a
Molecule annotation
1
Klla0e12277p
Molecule annotation
1
60S Ribosomal Protein L41-a
Molecule annotation
1
Eukaryotic Translation Initiation Factor 1A
Molecule annotation
1
Eukaryotic Translation Initiation Factor 2 Subunit Alpha
Molecule annotation
1
Eukaryotic Translation Initiation Factor 2 Subunit Gamma
Molecule annotation
1
Eukaryotic Translation Initiation Factor 2 Subunit Beta
Molecule annotation
1
Eukaryotic Translation Initiation Factor Eif-1
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit A,eukaryotic Translation Initiation Factor 3 Subunit A,eif3a
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit B
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit C
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit I
Molecule annotation
1
Eukaryotic Translation Initiation Factor 3 Subunit G
Molecule annotation
Nucleotides(2 molecules)
1
18S Ribosomal RNA
Molecule annotation
1
mRNA (5'-r(p*ap*ap*u)-3')
Molecule annotation
Chemicals and Non-standard biopolymers (87 molecules)
1
1
Met-tRNAi
1
[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2~{S})-2-azanyl-4-methylsulfanyl-butanoate (Link to PubChem not yet available)[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-4-oxidanyl-2-(phosphonooxymethyl)oxolan-3-yl] (2~{S})-2-azanyl-4-methylsulfanyl-butanoate
80
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
4
ZINC ION (Link to PubChem not yet available)ZINC ION
1
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER (Link to PubChem not yet available)PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
* Click molecule labels to explore molecular sequence information.

Citing MMDB