6J4Y: RNA polymerase II elongation complex bound with Elf1 and Spt4/5, stalled at SHL(-1) of the nucleosome (+1B)

PDB ID: 6J4YDownload
MMDB ID: 172478
PDB Deposition Date: 2019/1/10
Updated in MMDB: 2022/11
Experimental Method:
electron microscopy
Resolution: 4.3  Å
Source Organism:
Komagataella phaffii CBS 7435
Similar Structures:
Biological Unit for 6J4Y: 26-meric; determined by author
Molecular Components in 6J4Y
Label Count Molecule
Proteins (23 molecules)
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
DNA-directed RNA Polymerase Subunit Beta
Molecule annotation
1
RNA Polymerase II Third Largest Subunit B44, Part of Central Core
Molecule annotation
1
RNA Polymerase II Subunit B32
Molecule annotation
1
RNA Polymerase Subunit Abc27, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase Subunit Abc23, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase II Subunit
Molecule annotation
1
DNA-directed RNA Polymerases I, II, and III Subunit Rpabc3
Molecule annotation
1
DNA-directed RNA Polymerase Subunit
Molecule annotation
1
RNA Polymerase Subunit Abc10-beta, Common to RNA Polymerases I, II, and III
Molecule annotation
1
RNA Polymerase II Subunit B12.5
Molecule annotation
1
RNA Polymerase Subunit Abc10-alpha
Molecule annotation
1
Transcription Elongation Factor 1 Homolog
Molecule annotation
1
Transcription Elongation Factor Spt4
Molecule annotation
1
Protein That Forms a Complex With Spt4p
Molecule annotation
2
Histone H3.3
Molecule annotation
2
Histone H4
Molecule annotation
2
Histone H2A Type 1-b/e
Molecule annotation
2
Histone H2B Type 1-J
Molecule annotation
Nucleotides(3 molecules)
1
RNA (5'-r(p*cp*cp*up*gp*gp*up*gp*up*cp*up*up*gp*gp*gp*up*g)-3')
Molecule annotation
1
DNA (198-mer)
Molecule annotation
1
DNA (198-mer)
Molecule annotation
Chemicals and Non-standard biopolymers (11 molecules)
10
ZINC ION (Link to PubChem not yet available)ZINC ION
1
MAGNESIUM ION (Link to PubChem not yet available)MAGNESIUM ION
* Click molecule labels to explore molecular sequence information.

Citing MMDB