6YI7: Structure of cathepsin B1 from Schistosoma mansoni (SmCB1) in complex with an azanitrile inhibitor

PDB ID: 6YI7Download
MMDB ID: 196534
PDB Deposition Date: 2020/4/1
Updated in MMDB: 2021/10
Experimental Method:
x-ray diffraction
Resolution: 1.29  Å
Source Organism:
Similar Structures:
Biological Unit for 6YI7: monomeric; determined by author and by software (PISA)
Molecular Components in 6YI7
Label Count Molecule
Protein (1 molecule)
1
Cathepsin B-like Peptidase (C01 Family)
(Gene symbol: Smp_103610)
Molecule annotation
Chemicals and Non-standard biopolymers (3 molecules)
1
2
ACETATE IONACETATE ION
2
1
1-[(2~{S})-1-[[iminomethyl(methyl)amino]-methyl-amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-3-(phenylmethyl)urea1-[(2~{S})-1-[[iminomethyl(methyl)amino]-methyl-amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-3-(phenylmethyl)urea
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303