7R0W: 2.8 Angstrom cryo-EM structure of the dimeric cytochrome b6f-PetP complex from Synechocystis sp. PCC 6803 with natively bound lipids and plastoquinone molecules

PDB ID: 7R0WDownload
MMDB ID: 217353
PDB Deposition Date: 2022/2/2
Updated in MMDB: 2022/07
Experimental Method:
electron microscopy
Resolution: 2.8  Å
Source Organism:
Synechocystis sp. PCC 6803▼
Similar Structures:
Biological Unit for 7R0W: octadecameric; determined by author
Molecular Components in 7R0W
Label Count Molecule
Proteins (18 molecules)
2
Uncharacterized Protein Cp097, Conserved in Cyanobacteria
Molecule annotation
2
Cytochrome B6
Molecule annotation
2
Cytochrome B6-f Complex Subunit 4
Molecule annotation
2
Cytochrome F
Molecule annotation
2
Cytochrome B6
Molecule annotation
2
Cytochrome B6-f Complex Subunit 7
Molecule annotation
2
Cytochrome B6-f Complex Subunit 5
Molecule annotation
2
Cytochrome B6-f Complex Subunit 8
Molecule annotation
2
Rieske Domain, Petc
Molecule annotation
Chemicals and Non-standard biopolymers (27 molecules)
1
6
PROTOPORPHYRIN IX CONTAINING FE (Link to PubChem not yet available)PROTOPORPHYRIN IX CONTAINING FE
2
4
(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE (Link to PubChem not yet available)(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
3
2
beta,beta-caroten-4-one (Link to PubChem not yet available)beta,beta-caroten-4-one
4
2
2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE (Link to PubChem not yet available)2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE
5
2
CHLOROPHYLL A (Link to PubChem not yet available)CHLOROPHYLL A
6
2
HEME C (Link to PubChem not yet available)HEME C
7
1
1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE (Link to PubChem not yet available)1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE
8
2
(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE (Link to PubChem not yet available)(4S,7R)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE
9
1
(1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol (Link to PubChem not yet available)(1S,8E)-1-{[(2S)-1-hydroxy-3-{[(1S)-1-hydroxypentadecyl]oxy}propan-2-yl]oxy}heptadec-8-en-1-ol
10
2
FE2/S2 (INORGANIC) CLUSTER (Link to PubChem not yet available)FE2/S2 (INORGANIC) CLUSTER
11
2
1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL (Link to PubChem not yet available)1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL
12
1
EICOSANE (Link to PubChem not yet available)EICOSANE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303