8XKF: Crystal structure of Helicobacter pylori IspDF with substrate CTP

PDB ID: 8XKFDownload
MMDB ID: 245278
PDB Deposition Date: 2023/12/23
Updated in MMDB: 2024/05
Experimental Method:
x-ray diffraction
Resolution: 2.5  Å
Source Organism:
Similar Structures:
Biological Unit for 8XKF: trimeric; determined by author and by software (PISA)
Molecular Components in 8XKF
Label Count Molecule
Proteins (3 molecules)
3
Bifunctional Enzyme Ispd/ispf
(Gene symbol: ispDF)
Molecule annotation
Chemicals and Non-standard biopolymers (15 molecules)
1
4
1,2-ETHANEDIOL (Link to PubChem not yet available)1,2-ETHANEDIOL
2
3
CYTIDINE-5'-TRIPHOSPHATE (Link to PubChem not yet available)CYTIDINE-5'-TRIPHOSPHATE
3
4
GLYCEROL (Link to PubChem not yet available)GLYCEROL
4
1
ZINC ION (Link to PubChem not yet available)ZINC ION
5
1
CYTIDINE-5'-MONOPHOSPHATE (Link to PubChem not yet available)CYTIDINE-5'-MONOPHOSPHATE
6
1
SULFATE ION (Link to PubChem not yet available)SULFATE ION
7
1
CYTIDINE-5'-DIPHOSPHATE (Link to PubChem not yet available)CYTIDINE-5'-DIPHOSPHATE
* Click molecule labels to explore molecular sequence information.
Citing MMDB
Madej T, Lanczycki CJ, Zhang D, Thiessen PA, Geer RC, Marchler-Bauer A, Bryant SH. " MMDB and VAST+: tracking structural similarities between macromolecular complexes. Nucleic Acids Res. 2014 Jan; 42(Database issue):D297-303