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Taxonomy browser (Methanomethylophilus alvi)

Methanomethylophilus alvi

Taxonomy ID: 1291540 (for references in articles please use NCBI:txid1291540)
current name
"Methanomethylophilus alvi" Borrel et al. 2023, effective name in [Borrel G et al. (2023)]
type strain of "Methanomethylophilus alvi": personal::Mx-05, JCM:31474
not considered type of "Methanomethylophilus alvi": personal::Mx1201
NCBI BLAST name: archaea
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Candidatus Methanomethylophilus alvi" corrig. Borrel et al. 2012, candidatus name in [Candidatus List No. 1 (2020), Oren A (2017) [Candidatus List No. 0]]
reference material of "Candidatus Methanomethylophilus alvi" corrig.: personal::Mx1201
homotypic synonym:
"Candidatus Methanomethylophilus alvus" Borrel et al. 2012, candidatus name in [Borrel G et al. (2012b)]
equivalent:
Methanomethylophilus alvus
Lineage( full )
cellular organisms; Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Methanomassiliicoccales; Methanomethylophilaceae; Methanomethylophilus
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 2,053 2,047 2
Protein 6,448 4,796 -
Structure 15 14 -
Genome 1 1 -
Popset 2 2 -
PubMed Central 24 24 -
Gene 5,395 3,455 -
Protein Clusters 880 880 -
Identical Protein Groups 5,402 5,130 -
BioProject 15 14 -
BioSample 46 45 2
Assembly 27 24 1
Taxonomy 2 1 -

Comments and References:

Borrel G et al. (2023), PubMed: abstract
Borrel, G., Fadhlaoui, K., Ben Hania, W., Gaci, N., Pehau-Arnaudet, G., Chaudhary, P.P., Vandekerckove, P., Ballet, N., Alric, M., O'Toole, P.W., Fardeau, M.L., Ollivier, B., and Brugère, J.F. "Methanomethylophilus alvi gen. nov., sp. nov., a novel hydrogenotrophic methyl-reducing methanogenic archaea of the order Methanomassiliicoccales isolated from the human gut and proposal of the novel family Methanomethylophilaceae fam. nov." Microorganisms (2023) 11(11):2794.
Candidatus List No. 1 (2020), PubMed: abstract
Oren, A., Garrity, G.M., Parker, C.T., Chuvochina, M., and Trujillo, M.E. "Lists of names of prokaryotic Candidatus taxa." Int. J. Syst. Evol. Microbiol. (2020) 70(7):3956-4042.
Oren A (2017) [Candidatus List No. 0], PubMed: abstract
Oren, A. "A plea for linguistic accuracy - also for Candidatus taxa." Int. J. Syst. Evol. Microbiol. (2017) 67(4):1085-1094.
Borrel G et al. (2012b), doi: 10.1128/JB.01867-12, PubMed: abstract
Borrel, G., Harris, H.M., Tottey, W., Mihajlovski, A., Parisot, N., Peyretaillade, E., Peyret, P., Gribaldo, S., O'Toole, P.W., and Brugere, J.F. "Genome sequence of 'Candidatus Methanomethylophilus alvus' Mx1201, a methanogenic archaeon from the human gut belonging to a seventh order of methanogens." J. Bacteriol. (2012) 194(24):6944-6945.
Murray RG & Schleifer KH (1994)
Murray, R.G., and Schleifer, K.H. "Taxonomic notes: a proposal for recording the properties of putative taxa of procaryotes." Int. J. Syst. Bacteriol. (1994) 44(1):174-176.
Murray RG & Stackebrandt E (1995)
Murray, R.G., and Stackebrandt, E. "Taxonomic note: implementation of the provisional status Candidatus for incompletely described procaryotes." Int. J. Syst. Bacteriol. (1995) 45(1):186-187.
Protasov E et al. (2023), other link:https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/pmc/articles/PMC10684969/
Protasov, E., Nonoh, J.O., Kästle Silva, J.M., Mies, U.S., Hervé, V., Dietrich, C., Lang, K., Mikulski, L., Platt, K., Poehlein, A., Köhler-Ramm, T., Miambi, E., Boga, H.I., Feldewert, C., Ngugi, D.K., Plarre, R., Sillam-Dussès, D., Šobotník, J., Daniel, R., and Brune, A. "Diversity and taxonomic revision of methanogens and other archaea in the intestinal tract of terrestrial arthropods." Front. Microbiol. (2023) 14:1281628.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
8072295970: Methanomethylophilus alvus Mx-05 organism-specific Integrated Microbial Genomes
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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