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Taxonomy browser (Ictalurus punctatus)

Ictalurus punctatus

Taxonomy ID: 7998 (for references in articles please use NCBI:txid7998)
current name
Ictalurus punctatus (Rafinesque, 1818)
basionym:
Silurus punctatus Rafinesque, 1818
Genbank common name: channel catfish
NCBI BLAST name: bony fishes
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 2 (Vertebrate Mitochondrial)
Lineage( full )
cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Osteoglossocephalai; Clupeocephala; Otomorpha; Ostariophysi; Otophysi; Characiphysae; Siluriformes; Siluroidei; Ictaluridae; Ictalurus
   Entrez records   
Database name Direct links
Nucleotide 880,953
Protein 60,434
Structure 4
Genome 1
Popset 73
GEO Datasets 159
PubMed Central 2,076
Gene 38,634
SRA Experiments 1,084
Protein Clusters 11
Identical Protein Groups 46,476
BioProject 77
BioSample 1,009
Assembly 6
PubChem BioAssay 1
Taxonomy 1

Comments and References:

image:Ictalurus punctatus

Genome Information

Go to NCBI genomic BLAST page for Ictalurus punctatus

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider taxonomy/phylogenetic Arctos Specimen Database
DNA barcoding : Ictalurus punctatus taxonomy/phylogenetic Barcodes of Life
2 records from this provider supplemental materials Dryad Digital Repository
Ictalurus punctatus (Rafinesque, 1818) taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Ictalurus punctatus (Rafinesque, 1818) taxonomy/phylogenetic Integrated Taxonomic Information System
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Ictalurus punctatus (Rafinesque, 1818) taxonomy/phylogenetic Ocean Biogeographic Information System
Ictalurus punctatus taxonomy/phylogenetic TreeBase
WebScipio: Ictalurus punctatus organism-specific WebScipio - eukaryotic gene identification
diArk: Ictalurus punctatus organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
ATCC CRL-2772 [124 124] Auburn [2] CCBL1 [3 8] Industry pool [1 22]
Kansas [1 34 6] NEFC_F16-045 [1 13] NEFC_F16-049 [1 13] NEFC_F16-259 [1 13]
NEFC_F16-262 [1 13] NEFC_F16-263 [1 13] NEFC_F16-568 [1 13] NWAC103 [6 9910]
Norris [2 26] Rafinesque [2 2] Stuttgart [2] USDA103 [3 66518 1]
USDA103-YYmale1 [1 30] commercial [2 4703]
isolate
140 [6 5 6] 42607 [1] 42609 [1] 42610 [1]
440 [6 5 6] B [37 33] BI1 [1] BI2 [1]
BI3 [1] C [3 3] C100_NELC [1 1] C101_LASC [1 1]
C102_KYKC [1 1] C103_LAMC [1 1] C104_ARAC [1 1] C105_MSPC [1 1]
C10_FLCC [1 1] C11_FLCC [1 1] C12_FLCC [1 1] C13_FLAC [1 1]
C13_FLCC [1 1] C13_FLOC [1 1] C13_FLSWC [1 1] C14_FLAC [1 1]
C15_FLAC [1 1] C16_FLAC [1 1] C17_FLOC [1 1] C18_FLESC [1 1]
C18_FLYC [1 1] C19_FLESC [1 1] C1_FLMC [1 1] C1_FLSJC [1 1]
C1_GAAC [1 1] C1_GASC [1 1] C1_SCSC [1 1] C20_FLESC [1 1]
C21_FLYC [1 1] C21_NCCFC [1 1] C22_ALAC [1 1] C23_ALAC [1 1]
C24_ALAC [1 1] C24_MSPC [1 1] C25_ALAC [1 1] C25_MSPC [1 1]
C26_ALAC [1 1] C26_MSPC [1 1] C26_NCCFC [1 1] C27_MSPC [1 1]
C28_MSPC [1 1] C29_MSPC [1 1] C2_FLMC [1 1] C2_GASC [1 1]
C2_SCSC [1 1] C30_MSPC [1 1] C31_MSPC [1 1] C32_MSPC [1 1]
C33_NCCFC [1 1] C34_NCCFC [1 1] C35_SCWC [1 1] C36_ARAC [1 1]
C36_IABC [1 1] C36_IADC [1 1] C36_IAIC [1 1] C36_INFWC [1 1]
C36_INWC [1 1] C36_KYBC [1 1] C36_KYKC [1 1] C36_LARC [1 1]
C36_LASC [1 1] C36_MTFC [1 1] C36_MTYC [1 1] C36_NCROC [1 1]
C36_NDRC [1 1] C36_NELC [1 1] C36_NEPC [1 1] C36_OHEC [1 1]
C36_TXBC [1 1] C36_TXCC [1 1] C36_TXPC [1 1] C36_TXRC [1 1]
C36_TXSC [1 1] C36_WIMC [1 1] C36_WYBOC [1 1] C36_WYGC [1 1]
C36_WYPWC [1 1] C37_IADC [1 1] C37_IAIC [1 1] C37_INWC [1 1]
C37_MTFC [1 1] C37_MTYC [1 1] C37_NCCFC [1 1] C37_NCNC [1 1]
C37_NCROC [1 1] C37_NDRC [1 1] C37_NELC [1 1] C37_OHEC [1 1]
C37_SCEdC [1 1] C37_SCPdC [1 1] C37_SCWC [1 1] C37_VAJC [1 1]
C38_ARAC [1 1] C38_FLOC [1 1] C38_GAAC [1 1] C38_IADC [1 1]
C38_KYBC [1 1] C38_KYGC [1 1] C38_LACC [1 1] C38_LAMC [1 1]
C38_LARC [1 1] C38_LASC [1 1] C38_NCNC [1 1] C38_OKMC [1 1]
C38_SCEdC [1 1] C38_SCPdC [1 1] C38_TXTC [1 1] C38_WYBOC [1 1]
C39_ARAC [1 1] C39_GAAC [1 1] C39_IABC [1 1] C39_INWC [1 1]
C39_KYBC [1 1] C39_KYGC [1 1] C39_LACC [1 1] C39_LARC [1 1]
C39_LASC [1 1] C39_MNLC [1 1] C39_MSPC [1 1] C39_OKMC [1 1]
C39_SCEdC [1 1] C39_SCPdC [1 1] C39_SCWC [1 1] C39_WYBHC [1 1]
C39_WYBOC [1 1] C3_FLSJC [1 1] C40_KYKC [1 1] C40_LACC [1 1]
C40_MTFC [1 1] C40_MTYC [1 1] C40_NDRC [1 1] C40_NELC [1 1]
C40_OHEC [1 1] C40_WIMC [1 1] C41_INWC [1 1] C41_LARC [1 1]
C41_LASC [1 1] C41_MTFC [1 1] C41_MTYC [1 1] C41_WYBHC [1 1]
C41_WYPWC [1 1] C42_GAAC [1 1] C42_TXCC [1 1] C42_TXPC [1 1]
C42_TXRC [1 1] C42_TXSC [1 1] C42_TXTC [1 1] C42_WYBHC [1 1]
C43_ARAC [1 1] C43_KYBC [1 1] C43_KYKC [1 1] C43_MTFC [1 1]
C43_MTYC [1 1] C43_OHEC [1 1] C43_SCEdC [1 1] C43_SCWC [1 1]
C43_TNCC [1 1] C43_WIMC [1 1] C43_WYBHC [1 1] C43_WYGC [1 1]
C43_WYPWC [1 1] C44_IABC [1 1] C44_IADC [1 1] C44_KYBC [1 1]
C44_KYKC [1 1] C44_LAMC [1 1] C44_MTFC [1 1] C44_MTYC [1 1]
C44_NDRC [1 1] C44_WIMC [1 1] C44_WYPWC [1 1] C45_GAAC [1 1]
C45_IADC [1 1] C45_INWC [1 1] C45_KYGC [1 1] C45_KYKC [1 1]
C45_MTYC [1 1] C45_NEPC [1 1] C45_OHEC [1 1] C46_WYBOC [1 1]
C46_WYGC [1 1] C46_WYSC [1 1] C47_IADC [1 1] C47_NDRC [1 1]
C47_NEPC [1 1] C47_WIMC [1 1] C47_WYPWC [1 1] C47_WYSC [1 1]
C48_INFWC [1 1] C48_KYBC [1 1] C48_KYGC [1 1] C48_NDRC [1 1]
C48_WYPWC [1 1] C49_WIFC [1 1] C4_FLSJC [1 1] C50_ARAC [1 1]
C50_IABC [1 1] C50_LASC [1 1] C50_MSPC [1 1] C50_NCNC [1 1]
C50_SCSC [1 1] C51_ALAC [1 1] C51_ARAC [1 1] C51_IADC [1 1]
C51_MSPC [1 1] C51_NCCFC [1 1] C51_NCNC [1 1] C51_SCPdC [1 1]
C52_IAIC [1 1] C52_KYGC [1 1] C52_MTFC [1 1] C52_WYBHC [1 1]
C53_INFWC [1 1] C53_KYBC [1 1] C53_NCROC [1 1] C53_SCSC [1 1]
C53_SCWC [1 1] C53_VAJC [1 1] C54_INFWC [1 1] C54_SCEdC [1 1]
C54_SCPdC [1 1] C54_SCWC [1 1] C54_VAJC [1 1] C55_KYKC [1 1]
C55_MTYC [1 1] C55_NELC [1 1] C55_NEPC [1 1] C56_MNLC [1 1]
C57_IABC [1 1] C57_INFWC [1 1] C57_LARC [1 1] C58_TXSC [1 1]
C58_TXTC [1 1] C59_LACC [1 1] C5_GASC [1 1] C60_LARC [1 1]
C60_TXSC [1 1] C61_TXTC [1 1] C61_WYPWC [1 1] C62_LARC [1 1]
C63_IABC [1 1] C63_KYBC [1 1] C63_WYBHC [1 1] C64_MNLC [1 1]
C64_MTFC [1 1] C65_FLESC [1 1] C65_MSPC [1 1] C66_TXBC [1 1]
C66_TXCC [1 1] C67_TXCC [1 1] C68_IADC [1 1] C68_INFWC [1 1]
C69_MSPC [1 1] C69_WIMC [1 1] C6_SCSC [1 1] C70_WIFC [1 1]
C71_WIMC [1 1] C72_SCSC [1 1] C73_INWC [1 1] C74_ARAC [1 1]
C75_LAAC [1 1] C76_KYBC [1 1] C77_WIFC [1 1] C78_INWC [1 1]
C79_TXRC [1 1] C7_SCEdC [1 1] C80_TXTC [1 1] C81_LAAC [1 1]
C82_NEPC [1 1] C83_LASC [1 1] C84_TXRC [1 1] C85_LAAC [1 1]
C86_TXBC [1 1] C87_WYBHC [1 1] C88_WYSC [1 1] C89_NEPC [1 1]
C8_SCEdC [1 1] C90_LAMC [1 1] C91_MTYC [1 1] C92_IADC [1 1]
C93_NDRC [1 1] C94_IAIC [1 1] C95_KYKC [1 1] C96_FLCC [1 1]
C97_NEPC [1 1] C98_IAIC [1 1] C99_IAIC [1 1] C9_FLCC [1 1]
D [2 2] E [1 1] E0991 [2 2 1] Ex45D4 [1 1]
F [1 1] FDA39_75 [1 1 1] FLCC7 [1 1 1] FLSJC9 [1 1 1]
FLSWC2 [1 1 1] FLYC3 [1 1 1] FWS18783 [1 1] FWS18812 [1 1]
FWS18813 [1 1] FWS18814 [1 1] G [15 15] G-05-35 [2 2]
G-05-6 [11 11] G25 [4 4] GASC2 [1 1 1] GF14 [1 1 1]
INWC1 [1 1 1] INWFC10 [1 1 1] INWFC3 [1 1 1] INWFC7 [1 1 1]
IP-P-01 [1 1] IP-P-02 [1 1] IP-P-03 [1 1] Ip_1 [1 1]
Ip_2 [1 1] Ipu_B01 [1 1 1] Ipu_B02 [2 2 2] L3 [4 4 4]
LACC5 [1 1 1] M10 [9 9 9] MF18388 [1 1 1] MF21957 [1 1 1]
MF22219 [1 1 1] MF22222 [1 1 1] MF23444 [1 1 1] MF23445 [1 1 1]
MF23638 [1 1 1] MF23653 [1 1 1] MSPC7 [1 1 1] RFE511_72 [1 1 1]
RFE513_74 [1 1 1] RFE514_71 [1 1 1] RFE518_73 [1 1 1] SERCFISH0162 [2 1]
SERCFISH0163 [2 1] SERCFISH0170 [2 1] SERCFISH0171 [2 1] SERCFISH0172 [2 1]
SOOB02 [1 1] SOOC05 [1 1] SOOC07 [1 1] SOOC08 [1 1]
SOOD07 [1 1] SOOD12 [1 1] SOOE01 [1 1] SOOF04 [1 1]
SOOF05 [1 1] SOOG01 [1 1] SOOG05 [1 1] SOOG09 [1 1]
SOOH01 [1 1] SOOH02 [1 1] SOOH03 [1 1] SOOH04 [1 1]
SOOH07 [1 1] SOOH10 [1 1] SOOH12 [1 1] SPPA08 [1 1]
SPPB09 [1 1] SPPD01 [1 1] SPPD07 [1 1] SPPD09 [1 1]
SPPE12 [1 1] SPPF06 [1 1] SPPF08 [1 1] SPPG04 [1 1]
SPPG10 [1 1] SPPG12 [1 1] SPPH01 [1 1] SPPH02 [1 1]
SPPH09 [1 1] SPPH10 [1 1] TS32.15 [2 2] TXPC3 [1 1 1]
TXPC5 [1 1 1] Tuxpan [1 1] gill [1] sample_53 [1 1 1]
specimen-voucher
16GL3 [1 1 1] AMNH 233448 [1 1 1] AMNH233448 [3 3 1] ANSP 180368 [6 6 6]
ANSP:180368 [6 6 6] ANSP:FISH:180368 [6 6 6] AUHBF1 [1 1 1] AUHBF10 [1 1 1]
AUHBF2 [1 1 1] AUHBF4 [1 1 1] AUHBF5 [1 1 1] AUHBF6 [1 1 1]
AUHBF7 [1 1 1] AUHBF8 [1 1 1] AUHBF9 [1 1 1] AUHBM10 [1 1 1]
AUHBM2 [1 1 1] AUHBM5 [1 1 1] AUHBM6 [1 1 1] AUHBM8 [1 1 1]
AUIPB1 [1 1 1] AUIPF10 [1 1 1] AUIPF5 [1 1 1] AUIPF6 [1 1 1]
AUIPF7 [1 1 1] AUIPF9 [1 1 1] AUIPM10 [1 1 1] AUIPM2 [1 1 1]
AUIPM4 [1 1 1] AUIPM5 [1 1 1] AUIPM6 [1 1 1] AUIPM7 [1 1 1]
AUIPM9 [1 1 1] BIOUG<CAN>:BCF-0113-1 [1 1 1] BIOUG<CAN>:BCF-0115-1 [1 1 1] BIOUG<CAN>:BCF-0115-2 [1 1 1]
BIOUG<CAN>:BCF-0115-3 [1 1 1] CBM:ZF:15952 [1] CBM:ZF:17483 [1] CCBL1 [27 27]
CHC-SL02_12S [1] CHC-SL02_16S [1] CHC-SL03_12SF [1] CHC-SL03_16S [1]
CVM 401.04 [1 1] FDA 1-39 [1 1] FDA 2-39 [1 1] FDA 3-39 [1 1]
FDA 4-39 [1 1] H101 [1 1] H140 [1 1] H16 [1 1]
H243 [1 1] H350 [1 1] H89 [1 1] ICTAPUNC-K95-002 CERT [1 1]
ICTAPUNC-K95-003 CERT [1 1] ICTAPUNC-K95-004 CERT [1 1] INHS 47559 [6 5 5] INHS 93904 [1 1 1]
INHS:47559 [6 5 5] IP1984-01 [1 1] IP2000-01 [1 1] IP2000-02 [1 1]
IP2000-03 [1 1] IP2000-04 [1 1] IP2000-05 [1 1] IP2000-06 [1 1]
IP2000-08 [1 1] Ictalurus_punctatus_12S [1] KU:IT:07845 [2 2 1] KYKC5 (Department of Biological Sciences, University of Tulsa) [1 1 1]
LHKY IP0106 [1 1 1] LHKY IP0108 [1 1 1] LHKY IP0115 [1 1 1] LHKY IP0116 [1 1 1]
LHKY IP0120 [1 1 1] LHKY IP0122 [1 1 1] LHKY IP0126 [1 1 1] LHKY IP0132 [1 1 1]
LHKY IP0138 [1 1 1] LHKY IP0139 [1 1 1] MC01-CHC-321_16S [1] MC01-CHC-322_16S [1]
MC02-CHC-373_16S [1] MC03-CHC-002_16S [1] MC03-CHC-016_16S [1] MC05-CHC-026_16SR [1]
MC05-CHC-040_16SR [1] MC10-CHC-307_16SR [1] MC101-CHC-535_16S [1] MC11-CHC-422_16S [1]
MC12-CHC-280_16S [1] MC72-CHC-050_16S [1] MC72-CHC-066_16SR [1] MC73-CHC-094_16S [1]
MC73-CHC-099_16S [1] MC74-CHC-131_16S [1] MC74-CHC-144_16S [1] MC77-CHC-195_16S [1]
MC77-CHC-196_16S [1] MC79-CHC-239_16S [1] MUHNAC MB85-016900 [1 1] MXIII540 [1 1]
MXIII541 [1 1] MXIII542 [1 1] NAFF 4118 [1 1] NEFC_F19-337 [1 1 13]
NXG2012102 [2 2] NXG2012138 [2 2] NXG2013454 [2 2] NXG201378 [2 2]
NXG201379 [2 2] ROM 86705 [9 8 9] ROM:ICH:BCF-0114-1 [1 1 1] ROM:ICH:BCF-0114-2 [1 1 1]
ROM:ICH:BCF-0114-3 [1 1 1] ROM:ICH:BCF-0394-1 [1 1 1] ROM:ICH:BCF-0394-2 [1 1 1] ROM:ICH:BCF-0394-3 [1 1 1]
ROM:ICH:BCF-0501-1 [1 1 1] ROM:ICH:BCF-0501-2 [1 1 1] TCWC13605.01 [1 1 1] TCWC13606.01 [1 1 1]
UMSNH 5722 [9 8 9] UMSNH-103-RODO [1 1 1] UMSNH-103-Teiteco [1 1 1] UMSNH-108 [3 3 5]
UMSNH-109 [4 3 6] UMSNH-110 [4 3 6] UMSNH-111 [3 2 5] UMSNH-112 [4 3 6]
UMSNH-1692 [4 3 6] UMSNH-1699 [1 1 1] UMSNH-1707 [4 3 6] UMSNH-1711 [3 2 5]
UMSNH-1714 [1 1 1] UMSNH-1715 [4 3 6] UMSNH-1717 [4 3 6] UMSNH-1725 [1 1 1]
UMSNH-1749 [2 2 2] UMSNH-1775 [4 3 6] UMSNH-1826 [1 1 1] UMSNH-2021 [2 2 4]
UMSNH-2023 [3 2 3] UMSNH-2298 [1 1 1] UMSNH-2299 [4 3 6] UMSNH-2300 [3 2 5]
UMSNH-2902 [4 3 6] UMSNH-3236 [4 3 6] UMSNH-3237 [4 3 6] UMSNH-3474 [4 3 6]
UMSNH-3475 [1 1 1] UMSNH-3643 [1 1 1] UMSNH-3656 [1 1 1] UMSNH-5507 [1 1 1]
UMSNH-5724 [1 1 1] UMSNH-5985 [4 3 6] UMSNH-6063 [4 3 6] UMSNH-6064 [4 3 6]
UMSNH-6083 [4 3 6] UMSNH-6176 [4 3 6] UMSNH-7956 [4 3 6] UMSNH-7957 [4 3 6]
USNM:FISH:423807 [2 1] USNM:FISH:423842 [2 1] USNM:FISH:423843 [2 1] USNM:FISH:426194 [2 1]
USNM:FISH:426196 [2 1] USON-1430-2 [4 4 4] ZFMK:50345 [1 1] ihb201308568 [1 1]
ihb201308569 [1 1] ihb201308570 [1 1] ihb201308571 [1 1] ihb201308572 [1 1]
ihb201308573 [1 1]
breed
USDA103 [1 58071 49896 28] channel catfish [5 1 1]
bio-material
UOG:BIO:BCF-0113-1 [1 1 1] UOG:BIO:BCF-0115-1 [1 1 1] UOG:BIO:BCF-0115-2 [1 1 1] UOG:BIO:BCF-0115-3 [1 1 1]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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