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Taxonomy browser (Xylella fastidiosa 9a5c)

Xylella fastidiosa 9a5c

Taxonomy ID: 160492 (for references in articles please use NCBI:txid160492)
current name
Xylella fastidiosa 9a5c
NCBI BLAST name: g-proteobacteria
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xylella; Xylella fastidiosa
   Entrez records   
Database name Direct links
Nucleotide 167
Protein 5,765
Structure 12
Genome 1
GEO Datasets 28
PubMed Central 18
Gene 3,625
Identical Protein Groups 3,709
Bio Project 4
Bio Sample 1
Bio Systems 145
Assembly 1
Taxonomy 1

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Van Sluys MA et al. (2003)
Van Sluys, M.A., de Oliveira, M.C., Monteiro-Vitorello, C.B., Miyaki, C.Y., Furlan, L.R., Camargo, L.E.A., da Silva, A.C.R. Moon, D.H., Takita, M.A., Lemos, E.G.M., Machado, M.A., Ferro, M.I.T., da Silva, F.R., Goldman, M.H.S., Goldman, G.H., Lemos, M.V.F., El-Dorry, H., Tsai, S.M., Carrer, H., Carraro, D.M., de Oliveira, R.C., Nunes, L.R., Siqueira, W.J., Coutinho, L.L., Kimura, E.T., Ferro, E.S., Harakava, R., Kuramae, E.E., Marino, C.L., Giglioti, E., Abreu, I.L., Alves, L.M.C., do Amaral, A.M., Baia,G.S., Blanco, S.R., Brito, M.S., Cannavan, F.S., Celestino, A.V., da Cunha, A.F., Fenille, R.C., Ferro, J.A., Formighieri, E.F., Kishi, L.T., Leoni, S.G., Oliveira, A.R., Rosa, V.E. Jr., Sassaki, F.T., Sena, J.A.D., de Souza, A.A., Truffi, D., Tsukumo, F., Yanai, G.M., Zaros, L.G., Civerolo, E.L., Simpson, A.J.G., Almeida, N.F. Jr., Setubal, J.C., and Kitajima, J.P. "Comparative analyses of the complete genome sequences of Pierce's disease and citrus variegated chlorosis strains of Xylella fastidiosa." J.Bacteriol. (2003) 185:1018-1026.
Simpson AJ et al. (2000)
Simpson, A.J., Reinach, F.C., Arruda, P., Abreu, F.A., Acencio, M., Alvarenga, R., Alves, L.M., Araya, J.E., Baia, G.S., Baptista, C.S., Barros, M.H., Bonaccorsi, E.D., Bordin, S., Bove, J.M., Briones, M.R., Bueno, M.R., Camargo, A.A., Camargo, L.E., Carraro, D.M., Carrer, H., Colauto, N.B., Colombo, C., Costa, F.F., Costa, M.C., Costa-Neto, C.M., Coutinho, L.L., Cristofani, M., Dias-Neto, E., Docena, C., El-Dorry, H., Facincani, A.P., Ferreira, A.J,, Ferreira, V.C., Ferro, J.A., Fraga, J.S., Franca, S.C., Franco, M.C., Frohme, M., Furlan, L.R., Garnier, M., Goldman, G.H., Goldman, M.H., Gomes, S.L., Gruber, A., Ho, P.L., Hoheisel, J.D., Junqueira, M.L., Kemper, E.L., Kitajima, J.P., Krieger, J.E., Kuramae, E.E., Laigret, F., Lambais, M.R., Leite, L.C., Lemos, E.G., Lemos, M.V., Lopes, S.A., Lopes, C.R., Machado, J.A., Machado, M.A., Madeira, A.M., Madeira, H.M., Marino, C.L., Marques, M.V., Martins, E.A., Martins, E.M., Matsukuma, A.Y., Menck, C.F., Miracca, E.C., Miyaki, C.Y., Monteriro-Vitorello, C.B., Moon, D.H., Nagai, M.A., Nascimento, A.L., Netto, L.E., Nhani, A. Jr,, Nobrega, F.G., Nunes, L.R., Oliveira, M.A., de Oliveira, M.C., de Oliveira, R.C., Palmieri, D.A., Paris, A., Peixoto, B.R., Pereira, G.A., Pereira, H.A. Jr., Pesquero, J.B., Quaggio,R.B., Roberto, P.G., Rodrigues, V., de Rosa, A.J., de Rosa, V.E. Jr., de Sa, R.G., Santelli, R.V., and 22 other authors. "The genome sequence of the plant pathogen Xylella fastidiosa." Nature (2000) 406:151-157.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Xylella fastidiosa 9a5c organism-specific BioCyc
GOLD: Go0000755 organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
637000348: Xylella fastidiosa 9a5c organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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