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Taxonomy browser (Agrobacterium fabrum str. C58)

Agrobacterium fabrum str. C58

Taxonomy ID: 176299 (for references in articles please use NCBI:txid176299)
current name
Agrobacterium fabrum str. C58
includes:
Agrobacterium tumefaciens (strain C58 / ATCC 33970)
Agrobacterium tumefaciens (strain C58)
Agrobacterium tumefaciens str. C58
Agrobacterium tumefaciens str. C58 (Cereon)
Agrobacterium tumefaciens str. C58 (Dupont)
Agrobacterium tumefaciens str. C58 (U. Washington)
Rhizobium radiobacter str. C58 (Cereon)
Rhizobium radiobacter str. C58 (Dupont)
Rhizobium radiobacter str. C58 (U. Washington)
NCBI BLAST name: a-proteobacteria
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex; Agrobacterium fabrum
   Entrez records   
Database name Direct links Links from type
Nucleotide 1,115 968
Protein 17,461 -
Structure 220 -
Genome 1 -
Popset 12 -
GEO Datasets 96 -
Gene 11,060 -
SRA Experiments 89 -
Identical Protein Groups 11,330 -
Bio Project 17 -
Bio Sample 114 110
Bio Systems 360 -
Assembly 3 1
Probe 1 -
PubChem BioAssay 1 -
Taxonomy 1 -

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Goodner B et al. (2001)
Goodner, B., Hinkle, G., Gattung, S., Miller, N., Blanchard, M., Qurollo, B., Goldman, B.S., Cao, Y., Askenazi, M., Halling, C., Mullin, L., Houmiel, K., Gordon, J., Vaudin, M., Iartchouk, O., Epp, A., Liu, F., Wollam, C., Allinger, M., Doughty, D., Scott, C., Lappas, C., Markelz, B., Flanagan, C., Crowell, C., Gurson, J., Lomo, C., Sear, C., Strub, G., Cielo, C., and Slater, S. "Genome sequence of the plant pathogen and biotechnology agent Agrobacterium tumefaciens C58." Science (2001) 294:2323-2328.
Slater S et al. (2013)
Slater, S., Setubal, J.C., Goodner, B., Houmiel, K., Sun, J., Kaul, R., Goldman, B.S., Farrand, S.K., Almeida, N. Jr., Burr, T., Nester, E., Rhoads, D.M., Kadoi, R., Ostheimer, T., Pride, N., Sabo, A., Henry, E., Telepak, E., Cromes, L., Harkleroad, A., Oliphant, L., Pratt-Szegila, P., Welch, R., and Wood, D. "Reconciliation of sequence data and updated annotation of the genome of Agrobacterium tumefaciens C58, and distribution of a linear chromosome in the genus Agrobacterium." Appl. Environ. Microbiol. (2013) 79:1414-1417.
Wood DW et al. (2001)
Wood, D.W., Setubal, J.C., Kaul, R., Monks, D., Chen, L., Wood, G.E., Chen, Y., Woo, L., Kitajima, J.P., Okura, V.K., Almeida Jr., N.F., Zhou, Y., Bovee Sr., D., Chapman, P., Clendenning, J., Deatherage, G., Gillet, W., Grant, C., Guenthner, D., Kutyavin, T., Levy, R., Li, M., McClelland, E., Palmieri, A., Raymond, C., Rouse, G., Saenphimmachak, C., Wu, Z., Gordon, D., Eisen, J.A., Paulsen, I., Karp, P., Romero, P., Zhang, S., Yoo, H., Tao, Y., Biddle, P., Jung, M., Krespan, W., Perry, M., Gordon-Kamm, B., Liao, L., Kim, S., Hendrick, C., Zhao, Z., Dolan, M., Tingey, S.V., Tomb, J., Gordon, M.P., Olson, M.V., and Nester, E.W. "The genome of the natural genetic engineer Agrobacterium tumefaciens C58." Science (2001) 294:2317-2323.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider organism-specific BioCyc
2 records from this provider organism-specific Genomes On Line Database
639279302: Agrobacterium tumefaciens C58-UWash organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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