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Taxonomy browser (Amycolatopsis echigonensis)

Amycolatopsis echigonensis

Taxonomy ID: 369930 (for references in articles please use NCBI:txid369930)
current name
Amycolatopsis echigonensis Ding et al. 2007 in [Ding L et al. (2007)]
type strain of Amycolatopsis echigonensis: CCTCC:AB 206019, IAM:15387, JCM:21831, personal::LC2
homotypic synonym:
Amycolatopsis echigonensis Ding et al. 2007 emend. Deng et al. 2024, emended name 1) in [Deng A et al. (2024)]
includes:
Amycolatopsis sp. LC2
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Amycolatopsis niigatensis Ding et al. 2007 in [Ding L et al. (2007)]
type strain of Amycolatopsis niigatensis: CCTCC:AB206020, IAM:15388, JCM:21832, personal::LC11, DSM:45165
homotypic synonym:
Amycolatopsis niigatensis Ding et al. 2007 emend. Nouioui et al. 2018, emended name in [Nouioui I et al. (2018c)]
includes:
Amycolatopsis sp. LC11
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Pseudonocardiales; Pseudonocardiaceae; Amycolatopsis
   Entrez records   
Database name Direct links Links from type
Nucleotide 329 321
Protein 21,535 -
Genome 1 -
Popset 4 -
PubMed Central 3 -
Gene 1 -
Identical Protein Groups 14,378 -
BioProject 3 -
BioSample 2 2
Assembly 2 -
Taxonomy 1 -

Notes:

Comments and References:
Ding L et al. (2007), PubMed: abstract
Ding, L., Hirose, T., and Yokota, A. "Amycolatopsis echigonensis sp. nov. and Amycolatopsis niigatensis sp. nov., novel actinomycetes isolated from a filtration substrate." Int. J. Syst. Evol. Microbiol. (2007) 57(8):1747-1751.
Deng A et al. (2024)
Deng, A., Fu, L., Mo, P., Zheng, Y., Tang, T., and Gao, J. "New insights into the relationship between the average nucleotide identity and the digital DNA-DNA hybridization values in the genus Amycolatopsis and Amycolatopsis cynarae sp. nov., a novel actinobacterium from the rhizosphere soil of Cynara scolymus, and proposal of Amycolatopsis niigatensis as a synonym of Amycolatopsis echigonensis based on comparative genomic analysis." Front. Microbiol. (2024) 15:1359021.
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Deng A et al. (2024), doi:10.3389/fmicb.2024.1359021
Deng, A., Fu, L., Mo, P., Zheng, Y., Tang, T., and Gao, J. "New insights into the relationship between the average nucleotide identity and the digital DNA-DNA hybridization values in the genus Amycolatopsis and Amycolatopsis cynarae sp. nov., a novel actinobacterium from the rhizosphere soil of Cynara scolymus, and proposal of Amycolatopsis niigatensis as a synonym of Amycolatopsis echigonensis based on comparative genomic analysis." Front. Microbiol. (2024) 15:1359021.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Amycolatopsis echigonensis meta-databases BacDive
Amycolatopsis echigonensis culture/stock collections Global Catalogue of Microorganisms
8068877689: Amycolatopsis echigonensis JCM 21831 organism-specific Integrated Microbial Genomes
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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