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Taxonomy browser (Phocaeicola vulgatus)

Phocaeicola vulgatus

Taxonomy ID: 821 (for references in articles please use NCBI:txid821)
current name
Phocaeicola vulgatus (Eggerth and Gagnon 1933) García-López et al. 2020 in [Validation List No. 193 (2020)]
homotypic synonym:
"Phocaeicola vulgatus" (Eggerth and Gagnon 1933) García-López et al. 2019, effective name in [García-López M et al. (2019)]
basionym:
Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
type strain of Bacteroides vulgatus: ATCC:8482, BCRC:12903, CCUG:4940, CIP:103714, DSM:1447, IFO:14291, JCM:5826, BCCM/LMG:17767, BCCM/LMG:7956, NBRC:14291, NCTC:11154
homotypic synonym:
Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) emend. Hahnke et al. 2016, emended name in [Hahnke RL et al. (2016), List of Changes in Taxonomic Opinion No. 26 (2017)]
includes:
bacterium NLAE-zl-G202
NCBI BLAST name: CFB group bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 185,161 182,831 165
Protein 1,121,431 1,086,937 -
Structure 70 5 -
Genome 2 1 -
Popset 14 14 -
Conserved Domains 1 1 -
GEO Datasets 81 63 -
PubMed Central 1,397 1,380 -
Gene 13,475 8,681 -
SRA Experiments 846 659 -
Protein Clusters 3,293 3,293 -
Identical Protein Groups 215,294 210,487 -
BioProject 161 139 -
BioSample 4,841 4,636 14
Assembly 1,483 1,472 -
PubChem BioAssay 53 53 -
Taxonomy 15 1 -

Comments and References:
Validation List No. 193 (2020)
Validation List No. 193. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2020) 70(5):2960-2966.
García-López M et al. (2019), doi: 10.3389/fmicb.2019.02083, PubMed: abstract
García-López, M., Meier-Kolthoff, J.P., Tindall, B.J., Gronow, S., Woyke, T., Kyrpides, N.C., Hahnke, R.L., and Göker, M. "Analysis of 1,000 type-strain genomes improves taxonomic classification of Bacteroidetes." Front Microbiol. (2019) 10:2083.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Hahnke RL et al. (2016), doi: 10.3389/fmicb.2016.02003, PubMed: abstract
Hahnke, R.L., Meier-Kolthoff, J.P., García-López, M., Mukherjee, S., Huntemann, M., Ivanova, N.N., Woyke, T., Kyrpides, N.C., Klenk, H.-P., and Göker, M. "Genome-based taxonomic classification of Bacteroidetes." Front. Microbiol. (2016) 7:2003.
List of Changes in Taxonomic Opinion No. 26 (2017), PubMed: abstract
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2017) 67(7):2081-2086.
Cato EP & Johnson JL (1976)
Cato, E.P., and Johnson, J.L. "Reinstatement of species rank for Bacteroides fragilis, B. ovatus, B. distasonis, B. thetaiotaomicron, and B. vulgatus: Designation of neotype strains for Bacteroides fragilis (Veillon and Zuber) Castellani and Chalmers and Bacteroides thetaiotaomicron (Distaso) Castellani and Chalmers." Int. J. Syst. Bacteriol. (1976) 26:230-237. [No PubMed record available.]
Eggerth AH & Gagnon BH (1933), other link:http://jb.asm.org/content/25/4/389.long
Eggerth, A.H., and Gagnon, B.H. "The bacteroides of human feces." J. Bacteriol. (1933) 25:389-413. [No abstract available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Phocaeicola vulgatus meta-databases BacDive
Bacteroides vulgatus Eggerth and Gagnon 1933 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
36 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Bacteroides vulgatus culture/stock collections Global Catalogue of Microorganisms
75 records from provider organism-specific Integrated Microbial Genomes
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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