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Taxonomy browser (Pseudomonas aeruginosa)

Pseudomonas aeruginosa

Taxonomy ID: 287 (for references in articles please use NCBI:txid287)
Scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900
type strain of Pseudomonas aeruginosa: ATCC:10145
type strain of Pseudomonas aeruginosa: ATCC:10145-U
type strain of Pseudomonas aeruginosa: CCEB:481
type strain of Pseudomonas aeruginosa: CCUG:28447
type strain of Pseudomonas aeruginosa: CCUG:29297
type strain of Pseudomonas aeruginosa: CCUG:551
type strain of Pseudomonas aeruginosa: CFBP:2466
type strain of Pseudomonas aeruginosa: CIP:100720
type strain of Pseudomonas aeruginosa: DSM:50071
type strain of Pseudomonas aeruginosa: IBCS:277
type strain of Pseudomonas aeruginosa: IFO:12689
type strain of Pseudomonas aeruginosa: JCM:5962
type strain of Pseudomonas aeruginosa: BCCM/LMG:1242
type strain of Pseudomonas aeruginosa: NBRC:12689
type strain of Pseudomonas aeruginosa: NCCB:76039
type strain of Pseudomonas aeruginosa: NCIMB:8295
type strain of Pseudomonas aeruginosa: NCTC:10332
type strain of Pseudomonas aeruginosa: NRRL:B:771
type strain of Pseudomonas aeruginosa: RH:815
type strain of Pseudomonas aeruginosa: VKM:B:588
homotypic synonym: "Bacterium aeruginosum" Cohn 1872, effective name 1)
homotypic synonym: "Bacterium aeruginosum" Schroeter 1872, effective name 1)
homotypic synonym: "Bacillus aeruginosus" (Schroeter 1872) Trevisan 1885, effective name 1)
homotypic synonym: probable synonym or variety: "Pseudomonas polycolor" Clara 1930
includes: Pseudomonas sp. 2_1_26
includes: Pseudomonas sp. ACP_02
includes: Pseudomonas sp. CRRI 93
includes: Pseudomonas sp. PR_01
includes: Pseudomonas sp. PSE5
includes: Pseudomonas sp. RV3
includes: bacterium ASFP-37
includes: bacterium ASFP-38
includes: bacterium ASFP-45
includes: bacterium ASFP-46
includes: bacterium ASFP-48
includes: Pseudomonas sp. HSA1/2016
includes: Pseudomonas sp. UFT2/2016
includes: Pseudomonas sp. NCIM 2036
includes: Pseudomonas sp. NCIM 2862
includes: bacterium CRM125
Inherited blast name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Micrococcus pyocyaneus" Zopf 1884, effective name 1)
synonym: "Pseudomonas pyocyanea" (Zopf 1884) Migula 1895, effective name 1)
synonym: Pseudomonas polycolor
synonym: "Bacillus pyocyaneus" (Zopf 1884) Flugge 1886, effective name 1)
synonym: "Bacterium pyocyaneum" (Zopf 1884) Lehmann and Neumann 1896, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,595,191 1,454,743
Protein 15,680,813 14,304,200
Structure 1,849 903
Genome 1 1
Popset 891 891
Conserved Domains 10 9
GEO Datasets 2,549 1,829
PubMed Central 56,998 56,998
Gene 120,037 1,113
SRA Experiments 10,183 7,461
GEO Profiles 141,600 141,600
Protein Clusters 7,547 7,547
Identical Protein Groups 1,231,426 1,196,066
Bio Project 1,200 726
Bio Sample 14,092 11,368
Bio Systems 5,937 282
Assembly 4,323 3,995
Probe 738 671
PubChem BioAssay 8,886 7,471
Taxonomy 382 1

Notes:

Comments and References:

Cohn F (1872)
Cohn, F. "Untersuchungen uber Bakterien." Beitrage zur Biologie der Pflanzen, 1875 1 (Heft 2) (1872) 1:127-224. [No PubMed record available.]

Flugge C (1886)
Flugge, C. Die Microorganismen. (1886) F.C.W. Vogel, Leipzig. [No PubMed record available.]

Nota BeneLapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]

Migula W (1895)
Migula, W. "Bacteriaceae (Stabchenbacterien)." In: Engler and Prantl (Editors), Die Naturlichen Pflanzenfamilien. (1895) W. Engelmann, Leipzig, Teil I Abt. 1a, pp.20-30. [No PubMed record available.]

Migula W (1900)
Migula, W. System der Bakterien, Vol. 2. (1900) Gustav Fischer, Jena. [No PubMed record available.]

Schroeter J (1872)
Schroeter, J. "Uber einige durch Bacterien gebildete Pigmente. (1872)". In: F. Cohn (ed.), Beitrage zur Biologie der Pflanzen. J.U. Kern's Verlag, Breslau, 1875, pp. 109-126. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Trevisan V (1885)
Trevisan, V. "Caratteri di alcuni nuovi generi di Batteriaceae [Characteristics of some new genera of Bacteriaceae]." Atti. Accad. Fis.-Med.-Stat. Milano (Ser 4) (1885) 3:92-106. [No PubMed record available.]


Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
454 CLONEEND FINISHING PRIMERWALK SHOTGUN WGS ALL
BI - Broad Insititute
588,691 - - - - 188,537 777,228
HPGC - Albert Einstein College of Medicine
- - 259 - - 135,285 135,544
UWGC - University of Wasington Genome Center
- 9,960 - 3,930 16,448 113,850 144,188
Totals per type
588,691 9,960 259 3,930 16,448 437,672 1,056,960

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pseudomonas aeruginosa meta-databases BacDive
24 records from this provider organism-specific BioCyc
Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
102 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Pseudomonas aeruginosa culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
434 records from this provider organism-specific Integrated Microbial Genomes
Pseudomonas aeruginosa taxonomy/phylogenetic Lifemap
Pseudomonas Genome Project taxonomy/phylogenetic NCBI taxonomy bookmarks
Pseudomonas aeruginosa (taxon passport) culture/stock collections StrainInfo
3 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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