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Taxonomy browser (Escherichia coli)

Escherichia coli

Taxonomy ID: 562 (for references in articles please use NCBI:txid562)
Scientific name: Escherichia coli (Migula 1895) Castellani and Chalmers 1919
type strain of Escherichia coli: ATCC:11775
type strain of Escherichia coli: CCUG:24
type strain of Escherichia coli: CCUG:29300
type strain of Escherichia coli: CIP:54.8
type strain of Escherichia coli: DSM:30083
type strain of Escherichia coli: JCM:1649
type strain of Escherichia coli: BCCM/LMG:2092
type strain of Escherichia coli: NBRC:102203
type strain of Escherichia coli: NCCB:54008
type strain of Escherichia coli: NCTC:9001
homotypic synonym: "Bacillus coli" Migula 1895, effective name 1)
homotypic synonym: "Bacterium coli" (Migula 1895) Lehmann and Neumann 1896, effective name 1)
homotypic synonym: Enterococcus coli
includes: Escherichia sp. 3_2_53FAA
includes: Escherichia sp. MAR
includes: bacterium 10a
includes: bacterium E3
equivalent: Escherichia/Shigella coli
Inherited blast name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Bacterium coli commune" Escherich 1885, effective name 1)
common name: E. coli
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
   Entrez records   
Database name Subtree links Direct links
Nucleotide 5,646,019 4,529,028
Protein 41,669,810 30,644,530
Structure 9,075 5,363
Genome 1 1
Popset 5,122 5,112
Conserved Domains 45 28
GEO Datasets 13,473 8,037
PubMed Central 281,784 281,778
Gene 334,875 18,004
SRA Experiments 109,401 93,211
GEO Profiles 313,301 298,677
Protein Clusters 17,571 17,571
Identical Protein Groups 3,943,873 3,600,048
Bio Project 6,837 3,514
Bio Sample 114,131 99,342
Bio Systems 22,561 1,814
Assembly 17,004 13,462
Probe 2,210 1,804
PubChem BioAssay 16,622 14,911
Taxonomy 3,316 1


Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]

Escherich T (1885)
Escherich, T. "Die Darmbakterien des Neugeborenen und Sauglingen" Fortschr. Med. (1885) 3:515-528,547-554.

Nota BeneLapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

Lehmann KB & Neumann R (1896)
Lehman, K.B., and Neumann, R. Atlas und Grundriss der Bakeriologie und Lehrbuch der speziellen bakteriologischen Diagnositk. 1st Ed., (1896) J.F. Lehmann, Munchen. [No PubMed record available.]

Reference to PubMed documentMartinez-Murcia AJ et al. (1999)
Martinez-Murcia, A.J., Anton, A.I., Rodriguez-Valera, F. "Patterns of sequence variation in two regions of the 16S rRNA multigene family of Escherichia coli." Int. J. Syst. Bacteriol. (1999) 49:601-610.

Migula W (1895)
Migula, W. "Bacteriaceae (Stabchenbacterien)." In: Engler and Prantl (Editors), Die Naturlichen Pflanzenfamilien. (1895) W. Engelmann, Leipzig, Teil I Abt. 1a, pp.20-30. [No PubMed record available.]

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Nota BeneWadley TD et al. (2019)
Wadley, T.D., Jenjaroenpun, P., Wongsurawat, T., Ussery, D.W., and Nookaew, I. "Complete genome and plasmid sequences of Escherichia coli type strain ATCC 11775." Microbiol. Resour. Announc. (2019) 8:e00046-19.

Genome Information

   Trace records (raw single-pass reads of DNA sequence)   
Sequencing Center Name
Record counts per type
BI - Broad Insititute
1,710 1,710
LGC - LGC Group llc
96 96
NIST - National Institute for Standards and Technology
144 144
Totals per type
1,950 1,950

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Escherichia coli meta-databases BacDive
100 records from this provider organism-specific BioCyc
2 records from this provider supplemental materials Dryad Digital Repository
Escherichia coli (Migula 1895) Castellani and Chalmers 1919 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
820 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Escherichia coli culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
1643 records from this provider organism-specific Integrated Microbial Genomes
Escherichia coli taxonomy/phylogenetic Integrated Taxonomic Information System
Escherichia coli taxonomy/phylogenetic Lifemap
4 records from this provider taxonomy/phylogenetic NCBI taxonomy bookmarks
Escherichia coli (taxon passport) culture/stock collections StrainInfo
Escherichia coli taxonomy/phylogenetic TreeBase
Escherichia coli Castellani & Chalmers, 1919 taxonomy/phylogenetic World Register of Marine Species
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

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