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Taxonomy browser (Vibrio cholerae)

Vibrio cholerae

Taxonomy ID: 666 (for references in articles please use NCBI:txid666)
Scientific name: Vibrio cholerae Pacini 1854
type strain of Vibrio cholerae: ATCC:14035
type strain of Vibrio cholerae: CCUG:9118 A
type strain of Vibrio cholerae: CECT:514
type strain of Vibrio cholerae: CIP:62.13
type strain of Vibrio cholerae: NCTC:8021
homotypic synonym: "Vibrio cholera" (sic) Pacini 1854, effective name 1)
homotypic synonym: "Bacillus cholerae" (Pacini 1854) Trevisan 1884, effective name 1)
homotypic synonym: "Spirillum cholerae" (Pacini 1854) Mac1889, effective name 1)
homotypic synonym: "Liquidivibrio cholerae" (Pacini 1854) Orla-Jensen 1909, effective name 1)
Inherited blast name: g-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
synonym: "Bacillo virgola del Koch" Trevisan 1884, effective name 1)
synonym: "Bacillus cholerae-asiaticae" Trevisan 1884, effective name 1)
synonym: "Kommabacillus" Koch 1884, effective name 1)
synonym: "Pacinia cholerae-asiaticae" (Trevisan 1884) Trevisan 1885, effective name 1)
synonym: "Spirillum cholerae-asiaticae" (Trevisan 1884) Zopf 1885, effective name 1)
synonym: "Vibrio cholerae-asiaticae" (Trevisan 1884) Pfeiffer 1896, effective name 1)
synonym: "Vibrio comma" (Schroeter 1886) Blanchard 1906, effective name 1)
 
homotypic synonym: "Microspira comma" Schroeter 1886, effective name 1)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio
   Entrez records   
Database name Subtree links Direct links
Nucleotide 263,789 179,736
Protein 2,756,405 2,059,355
Structure 535 244
Genome 1 1
Popset 309 296
Conserved Domains 8 7
GEO Datasets 999 895
PubMed Central 16,072 16,072
Gene 43,152 173
SRA Experiments 7,808 6,269
Protein Clusters 5,560 5,560
Identical Protein Groups 330,396 303,277
Bio Project 636 366
Bio Sample 7,981 6,605
Bio Systems 3,557 1,086
Assembly 1,087 708
Probe 251 229
PubChem BioAssay 275 253
Taxonomy 284 1

Notes:

Comments and References:

Nota BeneLapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

Reference to PubMed documentNandi S et al. (1997)
Nandi, S., Khetawat, G., Sengupta, S., Majumder, R., Kar, S., Bhadra, R.K., Roychoudhury, S., and Das, J. "Rearrangements in the genomes of Vibrio cholerae strains belonging to different serovars and biovars." Int. J. Syst. Bacteriol. (1997) 47:858-862.

Nota BeneSkerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]


External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Vibrio cholerae meta-databases BacDive
11 records from this provider organism-specific BioCyc
dryaddb supplemental materials Dryad Digital Repository
Vibrio cholerae Pacini 1854 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
41 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Vibrio cholerae culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
237 records from this provider organism-specific Integrated Microbial Genomes
Vibrio cholerae taxonomy/phylogenetic Lifemap
Vibrio cholerae (taxon passport) culture/stock collections StrainInfo
4 records from this provider taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
Vibrio cholerae taxonomy/phylogenetic TreeBase
Vibrio cholerae Pacini, 1854 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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