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Taxonomy browser (Salmonella enterica subsp. enterica serovar Typhimurium)

Salmonella enterica subsp. enterica serovar Typhimurium

Taxonomy ID: 90371 (for references in articles please use NCBI:txid90371)
current name
Salmonella enterica subsp. enterica serovar Typhimurium
homotypic synonym:
Salmonella enterica serotype Typhimurium
Salmonella enterica serovar Typhimurium
Salmonella enterica subsp. enterica serovar 1,4,[5],12,:i:1,2
NCBI BLAST name: enterobacteria
Rank: no rank
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic genbank synonym
Salmonella typhimurium (Loeffler 1892) Castellani and Chalmers 1919
type strain of Salmonella typhimurium: NCTC:74, JCM:1652, CIP:58.58, ATCC:13311
heterotypic synonym
"Bacillus typhimurium" Loeffler 1892, effective name 1)
heterotypic synonym
"Salmonella typhi-murium" (sic) (Loeffler 1892) Castellani and Chalmers 1919, effective name 1)
heterotypic synonym
Salmonella choleraesuis serotype typhimurium
heterotypic synonym
Salmonella enterica 1,4,[5],12,:i:1,2
heterotypic synonym
Salmonella enterica ser. typhimurium
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica
   Entrez records   
Database name Subtree links Direct links
Nucleotide 381,708 222,391
Protein 5,243,090 2,796,263
Structure 873 483
Genome 1 1
Popset 131 131
Conserved Domains 22 15
GEO Datasets 3,611 2,110
PubMed Central 18,639 18,639
Gene 52,248 2,872
SRA Experiments 20,217 17,530
Identical Protein Groups 334,743 289,991
Bio Project 610 343
Bio Sample 22,858 20,254
Bio Systems 4,042 304
Assembly 5,328 4,522
Probe 514 312
PubChem BioAssay 2,970 2,838
Taxonomy 163 1

Notes:

Comments and References:

Castellani A & Chalmers AJ (1919)
Castellani, A., and Chalmers, A.J. Manual of Tropical Medicine, 3rd ed. (1919). Williams Wood and Co., New York. [No PubMed abstract available.]
Chang HR et al. (1997)
Chang, H.R., Loo, L.H., Jeyaseelan, K., Earnest, L., and Stackebrandt, E. "Phylogenetic relationships of Salmonella typhi and Salmonella typhimurium based on 16S rRNA sequence analysis." Int. J. Syst. Bacteriol. (1997) 47:1253-1254.
Ezaki T et al. (2000)
Ezaki, T., Kawamura, Y., and Yabuuchi, E. "Recognition of nomenclatural standing of Salmonella typhi (Approved Lists 1980), Salmonella enteritidis (Approved Lists 1980) and Salmonella typhimurium (Approved Lists 1980), and conservation of the specific epithets enteritidis and typhimurium. Request for an opinion." Int. J. Syst. Evol. Microbiol. (2000) 50:945-947.
Lapage SP et al. (1992) (reference with type strain information)
Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]
Loeffler F (1892)
Loeffler, F.: Zent. Bakteriol. Parasitenk. Infektionsk. Hyg. Abt. I. (1892) 11:129-141.
Skerman VBD et al. (1980) (Salmonella typhimurium)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Tindall BJ et al. (2005)
Tindall, B.J., Grimont, P.A.D., Garrity, G.M., and Euzeby, J.P. "Nomenclature and taxonomy of the genus Salmonella." Int. J. Syst. Evol. Microbiol. (2005) 55:521-524.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Salmonella enterica subsp. enterica meta-databases BacDive
4 records from this provider organism-specific BioCyc
64 records from this provider organism-specific Genomes On Line Database
Salmonella enterica subsp. enterica serovar typhimurium culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
84 records from this provider organism-specific Integrated Microbial Genomes
Salmonella nomenclature taxonomy/phylogenetic NCBI taxonomy bookmarks
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

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