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Taxonomy browser (Caudoviricetes)

Caudoviricetes 1)

Taxonomy ID: 2731619 (for references in articles please use NCBI:txid2731619)
current name
Caudoviricetes, ICTV accepted 1) in [Turner D et al. (2023)]
Genbank common name: bacterial and archaeal viruses with head-tail morphology
NCBI BLAST name: viruses
Rank: class
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
common name(s) phages with contractile tails, phages with long non-contractile tails, phages with short tails
includes
Caudovirales, ICTV accepted 1)
equivalent:
Tailed phages
includes
Myoviridae in [Turner D et al. (2023)]
includes
Podoviridae in [Turner D et al. (2023)]
includes
Siphoviridae in [Turner D et al. (2023)]
equivalent:
Styloviridae
in-part
bacterial virus
in-part
prokaryotic virus
Lineage( full )
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota
   Entrez records   
Database name Subtree links Direct links
Nucleotide 98,738 -
Protein 4,688,861 -
Structure 2,323 -
Genome 17,701 -
Popset 207 35
Conserved Domains 377 -
GEO Datasets 741 -
PubMed Central 3,505 349
Gene 582,518 -
SRA Experiments 9,706 231
Identical Protein Groups 2,930,497 -
BioProject 1,148 61
BioSample 53,673 626
Assembly 32,346 -
PubChem BioAssay 158 -
Taxonomy 28,876 1

Notes:

Comments and References:

Turner D et al. (2023), doi: 10.1007/s00705-022-05694-2, PubMed: abstract
Turner D, Shkoporov AN, Lood C, Millard AD, Dutilh BE, Alfenas-Zerbini P, van Zyl LJ, Aziz RK, Oksanen HM, Poranen MM, Kropinski AM, Barylski J, Brister JR, Chanisvili N, Edwards RA, Enault F, Gillis A, Knezevic P, Krupovic M, Kurtböke I, Kushkina A, Lavigne R, Lehman S, Lobocka M, Moraru C, Moreno Switt A, Morozova V, Nakavuma J, Reyes Muñoz A, Rūmnieks J, Sarkar BL, Sullivan MB, Uchiyama J, Wittmann J, Yigang T, Adriaenssens EM. 2023. Abolishment of morphology-based taxa and change to binomial species names: 2022 taxonomy update of the ICTV bacterial viruses subcommittee. Arch Virol 168(2):74.
Podoviridae classification 2008:

View and Analyze sequences in NCBI Virus
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External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
4 records from this provider organism-specific Integrated Microbial Genomes
3 records from provider taxonomy/phylogenetic International Committee on Taxonomy of Viruses
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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