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Taxonomy browser (Cyanobacteriota)

Cyanobacteriota

Taxonomy ID: 1117 (for references in articles please use NCBI:txid1117)
current name
Cyanobacteriota Oren et al. 2022 in [Oren A et al. (2022)]
Genbank common name: blue-green algae
NCBI BLAST name: cyanobacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Cyanophycota
heterotypic synonym
Cyanophyta
heterotypic synonym
Oxygenic photosynthetic bacteria
heterotypic synonym
Oxyphotobacteria
heterotypic synonym
"Cyanobacteria" (ex Stanier 1974) Cavalier-Smith 2002 in [Cavalier-Smith T (2002)]
common name(s) blue-green bacteria, cyanophytes
blast name
cyanobacteria
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Cyanobacteriota/Melainabacteria group
   Entrez records   
Database name Subtree links Direct links
Nucleotide 938,988 3
Protein 9,167,384 54
Structure 2,026 6
Genome 935 1
Popset 2,879 910
Conserved Domains 486 406
GEO Datasets 4,180 7
PubMed Central 46,574 18,817
Gene 482,341 -
SRA Experiments 7,775 344
GEO Profiles 68,829 -
Protein Clusters 41,192 349
Identical Protein Groups 9,150,870 51
BioProject 1,672 40
BioSample 14,784 393
Assembly 5,821 -
PubChem BioAssay 103 -
Taxonomy 31,195 1

Comments and References:

Oren A et al. (2022), PubMed: abstract
Oren, A., Mareš, J., and Rippka, R. "Validation of the names Cyanobacterium and Cyanobacterium stanieri, and proposal of Cyanobacteriota phyl. nov." Int. J. Syst. Evol. Microbiol. (2022) 72(10):005528.
Cavalier-Smith T (2002), PubMed: abstract
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.
Gaget V et al. (2011)
Gaget, V., Gribaldo, S., and Tandeau de Marsac, N. "An rpoB signature sequence provides unique resolution for the molecular typing of cyanobacteria." Int. J. Syst. Evol. Microbiol. (2011) 61:170-183.
Garcia-Pichel F et al. (2020)
Garcia-Pichel, F., Zehr, J.P., Bhattacharya, D., and Pakrasi, H.B. "What's in a name? The case of cyanobacteria." J. Phycol. (2020) 56(1):1-5.
Lyra C et al. (1997)
Lyra, C., Hantula, J., Vainio, E., Rapala, J., Rouhiainen, L., and Sivonen, K. "Characterization of cyanobacteria by SDS-PAGE of whole-cell proteins and PCR/RFLP of the 16S rRNA gene." Arch. Microbiol. (1997) 168:176-184.
Oren A (2004)
Oren, A. "A proposal for further integration of the cyanobacteria under the Bacteriological Code." Int. J. Syst. Evol. Microbiol. (2004) 54:1895-1902.
Oren A & Garrity GM (2014)
Oren, A., and Garrity, G.M. "Proposal to change General Consideration 5 and Principle 2 of the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2014) 64:309-310. [Erratum: Int. J. Syst. Evol. Microbiol. (2014) 64:2508.]
Pinevich AV (2015)
Pinevich, A.V. "Proposal to consistently apply the International Code of Nomenclature of Prokaryotes (ICNP) to names of the oxygenic photosynthetic bacteria (cyanobacteria), including those validly published under the International Code of Botanical Nomenclature (ICBN)/International Code of Nomenclature for algae, fungi and plants (ICN), and proposal to change Principle 2 of the ICNP." Int. J. Syst. Evol. Microbiol. (2015) 65:1070-1074.
Soo RM et al. (2014)
Soo, R.M., Skennerton, C.T., Sekiguchi, Y., Imelfort, M., Paech, S.J., Dennis, P.G., Steen, J.A., Parks, D.H., Tyson, G.W., and Hugenholtz, P. "An expanded genomic representation of the phylum cyanobacteria." Genome Biol. Evol. (2014) 6:1031-1045.
Woese CR et al. (1985)
Woese, C.R., Stackebrandt, E., Macke, T.J., and Fox, G.E. "A phylogenetic definition of the major eubacterial taxa." Syst. Appl. Microbiol. (1985) 6:143-151.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Cyanobacteria taxonomy taxonomy/phylogenetic Arctos Specimen Database
Cyanobacteria taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
3 records from this provider taxonomy/phylogenetic Index Nominum Algarum
17 records from this provider organism-specific Integrated Microbial Genomes
2 records from this provider taxonomy/phylogenetic Integrated Taxonomic Information System
Cyanobacteria taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Cyanobacteria Stanier ex Cavalier-Smith, 2002 taxonomy/phylogenetic Ocean Biogeographic Information System
ToL taxonomy/phylogenetic Tree of Life
Cyanobacteria Stanier ex Cavalier-Smith, 2002 taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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