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Taxonomy browser (Rhodococcus qingshengii)

Rhodococcus qingshengii

Taxonomy ID: 334542 (for references in articles please use NCBI:txid334542)
current name
Rhodococcus qingshengii Xu et al. 2007 in [Xu JL et al. (2007)]
type strain of Rhodococcus qingshengii: personal::djl-6, CGMCC:1.6580, JCM:15477, KCTC:19205, DSM:45222
homotypic synonym:
Rhodococcus qingshengii Xu et al. 2007 emend. Nouioui et al. 2018, emended name 1) in [Nouioui I et al. (2018c)]
includes:
Rhodococcus sp. F22
Rhodococcus sp. S10
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Rhodococcus jialingiae Wang et al. 2010 in [Wang Z et al. (2010)]
type strain of Rhodococcus jialingiae: personal::djl-6-2, DSM:45257, CCTCC:AB 208292
includes:
Rhodococcus sp. djl-6-2
heterotypic synonym
Rhodococcus enclensis Dastager et al. 2014 in [Dastager SG et al. (2014d)]
type strain of Rhodococcus enclensis: personal::NIO-1009, NCIM:5452, DSM:45688
homotypic synonym:
Rhodococcus enclensis Dastager et al. 2014 emend. Nouioui et al. 2018, emended name 1) in [Nouioui I et al. (2018c)]
includes:
Rhodococcus sp. NIO-1009
heterotypic synonym
Rhodococcus degradans Švec et al. 2015 in [Švec P et al. (2015b)]
type strain of Rhodococcus degradans: CCM:4446, BCCM/LMG:28633, DSM:6344
includes:
Rhodococcus sp. CCM 4446
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae; Rhodococcus; Rhodococcus erythropolis group
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 6,382 5,692 744
Protein 234,155 221,135 -
Genome 1 1 -
Popset 61 61 -
PubMed Central 159 159 -
Gene 26,075 26,075 -
SRA Experiments 40 39 -
Protein Clusters 1,156 1,156 -
Identical Protein Groups 129,681 128,757 -
BioProject 64 62 -
BioSample 100 96 8
Assembly 62 59 3
Taxonomy 3 1 -

Notes:

Comments and References:

Xu JL et al. (2007), PubMed: abstract
Xu, J.-L., He, J., Wang, Z.-C., Wang, K., Li, W.-J., Tang, S.-K., and Li, S.-P. "Rhodococcus qingshengii sp. nov., a carbendazim-degrading bacterium." Int. J. Syst. Evol. Microbiol. (2007) 57(12):2754-2757.
Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract
Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Wang Z et al. (2010), PubMed: abstract
Wang, Z., Xu, J., Li, Y., Wang, K., Wang, Y., Hong, Q., Li, W.-J., and Li, S.-P. "Rhodococcus jialingiae sp. nov., an actinobacterium isolated from sludge of a carbendazim wastewater treatment facility." Int. J. Syst. Evol. Microbiol. (2010) 60(2):378-381.
Dastager SG et al. (2014d), PubMed: abstract
Dastager, S.G., Mawlankar, R., Tang, S.-K., Krishnamurthi, S., Ramana, V.V., Joseph, N., and Shouche, Y.S. "Rhodococcus enclensis sp. nov., a novel member of the genus Rhodococcus." Int. J. Syst. Evol. Microbiol. (2014)l 64(8):2693-2697.
Švec P et al. (2015b), PubMed: abstract
Švec, P., Černohlávková, J., Busse, H.-J., Vojtková, H., Pantu Ček, R., Cnockaert, M., Mašlaňová, I., Králová, S., Vandamme ,P. and Sedláček, I. "Classification of strain CCM 4446T as Rhodococcus degradans sp. nov." Int. J. Syst. Evol. Microbiol. 65(12):4381-4387.
Lee SD & Kim IS (2021), doi:10.1099/ijsem.0.004890
Lee, S.D., and Kim, I.S. "Rhodococcus spelaei sp. nov., isolated from a cave, and proposals that Rhodococcus biphenylivorans is a later synonym of Rhodococcus pyridinivorans, Rhodococcus qingshengii and Rhodococcus baikonurensis are later synonyms of Rhodococcus erythropolis, and Rhodococcus percolatus and Rhodococcus imtechensis are later synonyms of Rhodococcus opacus." Int. J. Syst. Evol. Microbiol. (2021) 71(7):004890.
Lee SD et al. (2020), doi:10.1099/ijsem.0.004126
Lee, S.D., Kim, I.S., Kim, Y.-J., and Joung, Y. "Rhodococcus cavernicola sp. nov., isolated from a cave, and Rhodococcus degradans is a later heterosynonym of Rhodococcus qingshengii." Int. J. Syst. Evol. Microbiol. (2020) 70(7):4409-4415.
Nouioui I et al. (2018c)
Nouioui, I., Carro, L., GarcIa-Lopez, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Goker, M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Tancsics A et al. (2014)
Tancsics, A., Benedek, T., Farkas, M., Mathe, I., Marialigeti, K., Szoboszlay, S., Kukolya, J., and Kriszt, B. "Sequence analysis of 16S rRNA, gyrB and catA genes and DNA-DNA hybridization reveal that Rhodococcus jialingiae is a later synonym of Rhodococcus qingshengii." Int. J. Syst. Evol. Microbiol. (2014) 64:298-301.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Rhodococcus qingshengii meta-databases BacDive
3 records from this provider organism-specific BioCyc
4 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Rhodococcus qingshengii culture/stock collections Global Catalogue of Microorganisms
8 records from provider organism-specific Integrated Microbial Genomes
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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