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Taxonomy browser (Pseudomonadota)

Pseudomonadota

Taxonomy ID: 1224 (for references in articles please use NCBI:txid1224)
current name
Pseudomonadota corrig. Garrity et al. 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Proteobacteriota" Panda et al. 2022, effective name, orth. var. 1),2) in [Panda A et al. (2022)]
Proteobacteria Stackebrandt et al. 1988, nom. illeg. 3),4)
"Proteobacteria" Garrity et al. 2005 3) in [Validation List No. 106 (2005), Garrity GM et al. (2005)]
equivalent:
Proteobacteria
NCBI BLAST name: proteobacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Alphaproteobacteriota" Whitman et al. 2018
homotypic synonym:
"Alphaproteobacteraeota" Oren et al. 2015, effective name
common name(s) purple photosynthetic bacteria and relatives
blast name
proteobacteria
Lineage( full )
cellular organisms; Bacteria
   Entrez records   
Database name Subtree links Direct links
Nucleotide 53,600,882 12
Protein 545,210,857 35,885
Structure 34,453 1
Genome 10,877 -
Popset 37,751 11,989
Conserved Domains 6,730 2,484
GEO Datasets 69,376 -
PubMed Central 822,917 53,524
Gene 12,234,649 -
SRA Experiments 1,666,626 3,207
GEO Profiles 710,507 -
Protein Clusters 407,004 8,044
Identical Protein Groups 225,757,962 35,830
BioProject 77,240 175
BioSample 2,034,855 3,157
Assembly 1,237,710 -
Genetic Testing Registry 5 -
PubChem BioAssay 63,630 -
Taxonomy 227,625 1

Notes:

Comments and References:

Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Panda A et al. (2022), PubMed: abstract
Panda, A., Islam, S.T., and Sharma, G. "Harmonizing prokaryotic nomenclature: Fixing the fuss over phylum name flipping." mBio (2022) 13(3):e0097022.
Validation List No. 106 (2005)
Validation of publication of new names and new combinations previously effectively published outside the IJSEM. International Journal of Systematic and Evolutionary Microbiology 55(6):2235-2238.
Garrity GM et al. (2005)
Garrity, G.M., Bell, J.A., and Lilburn, T. "Phylum XIV. Proteobacteria phyl. nov." In: D.J. Brenner, N.R. Krieg, J.T. Staley and G. M. Garrity (eds.), Bergeys Manual of Systematic Bacteriology, second edition, vol. 2 (The Proteobacteria), part B (The Gammaproteobacteria), Springer, New York, 2005, p. 1.
Cavalier-Smith T (2002)
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.
Euzeby JP & Tindall BJ (2001)
Euzeby, J.P., and Tindall, B.J. "Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2001) 51(2):725-727.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
DNA barcoding : Proteobacteria taxonomy/phylogenetic Barcodes of Life
Proteobacteria taxonomy/phylogenetic Encyclopedia of life
2 records from this provider organism-specific Genomes On Line Database
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
135 records from this provider organism-specific Integrated Microbial Genomes
Proteobacteria taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Proteobacteria taxonomy/phylogenetic Ocean Biogeographic Information System
Proteobacteria taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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