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Taxonomy browser (Actinomycetes)

Actinomycetes

Taxonomy ID: 1760 (for references in articles please use NCBI:txid1760)
current name
Actinomycetes Krasil'nikov 1949, nom. approb. 1) in [Skerman VBD et al. (1980)]
homotypic synonym:
Actinobacteria Stackebrandt et al. 1997, nom. illeg. 2)
Actinomycetia Salam et al. 2020, nom. illeg. 2) in [Salam N et al. (2020)]
homotypic synonym:
Actinobacteria Stackebrandt et al. 1997 emend. Nouioui et al. 2018, emended name 3)
includes:
Actinobacteridae Stackebrandt et al. 1997 emend. Zhi et al. 2009
Genbank common name: high G+C Gram-positive bacteria
NCBI BLAST name: high G+C Gram-positive bacteria
Rank: class
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
blast name
high G+C Gram-positive bacteria
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota
   Entrez records   
Database name Subtree links Direct links
Nucleotide 6,853,579 11
Protein 135,583,427 36,563
Structure 10,021 6
Genome 4,389 -
Popset 10,128 6,828
Conserved Domains 928 406
GEO Datasets 16,384 -
PubMed Central 250,544 4,408
Gene 3,777,463 -
SRA Experiments 268,278 29
GEO Profiles 50,901 -
Protein Clusters 155,455 5,016
Identical Protein Groups 74,961,259 37,163
BioProject 19,601 9
BioSample 334,747 101
Assembly 47,488 -
Genetic Testing Registry 1 -
PubChem BioAssay 17,024 -
Taxonomy 83,475 1

Notes:

Comments and References:

Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
Salam N et al. (2020), PubMed: abstract
Salam, N., Jiao, J.-Y., Zhang, X.-T., and Li, W.-J. "Update on the classification of higher ranks in the phylum Actinobacteria." Int. J. Syst. Evol. Microbiol. (2020) 70(2):1331-1355.
Busse HJ & Schumann P (1999)
Busse, H.-J., and Schumann, P. "Polyamine profiles within genera of the class Actinobacteria with LL-diaminopimelic acid in the peptidoglycan." Int. J. Syst. Bacteriol. (1999) 49:179-184.
Euzeby JP & Tindall BJ (2001)
Euzeby, J.P., and Tindall, B.J. "Nomenclatural type of orders: corrections necessary according to Rules 15 and 21a of the Bacteriological Code (1990 Revision), and designation of appropriate nomenclatural types of classes and subclasses. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2001) 51(2):725-727.
Krasil'nikov NA (1949)
Krasil'nikov, N.A.: Guide to the Bacteria and Actinomycetes [Opredelitelv Bakterii i Actinomicetov], (1949). Akad. Nauk SSSR, Moscow, pp. 1-830. [No PubMed record available.]
Oren A (2017c)
Oren, A. "Proposal to designate the order Actinomycetales Buchanan 1917, 162 (Approved Lists 1980) as the nomenclatural type of the class Actinobacteria. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2017) 67:3687-3688.
Nouioui I et al. (2018c)
Nouioui, I., Carro, L., GarcIa-Lopez, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Goker, M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.
Stackebrandt E et al. (1997b)
Stackebrandt, E., Rainey, F.A., and Ward-Rainey, N.L. "Proposal for a new hierarchic classification system, Actinobacteria classis nov." Int. J. Syst. Bacteriol. (1997) 47:479-491. [No PubMed record available.]
Yoon JH & Park YH (2000)
Yoon, J.H., and Park, Y.H. "Comparative sequence analyses of the ribonuclease P (RNase P) RNA genes from LL-2,6-diaminopimelic acid-containing actinomycetes." Int. J. Syst. Evol. Microbiol. (2000) 50:2021-2029.
Zhi XY et al. (2009)
Zhi, X.-Y., Li, W.-J., and Stackebrandt, E. "An update of the structure and 16S rRNA gene sequence-based definition of higher ranks of the class Actinobacteria, with the proposal of two new suborders and four new families and emended descriptions of the existing higher taxa." Int. J. Syst. Evol. Microbiol. (2009) 59(3):589-608.

External Information Resources (NCBI LinkOut)

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35 records from this provider organism-specific Integrated Microbial Genomes
Actinobacteria taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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