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Taxonomy browser (Mycobacterium)

Mycobacterium

Taxonomy ID: 1763 (for references in articles please use NCBI:txid1763)
current name
Mycobacterium Lehmann and Neumann 1896 (Approved Lists 1980) emend. Gupta et al. 2018
NCBI BLAST name: high GC Gram+
Rank: genus
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Mycobacteriaceae
   Entrez records   
Database name Subtree links Direct links
Nucleotide 1,865,610 83
Protein 25,001,669 35,112
Structure 3,073 -
Genome 108 1
Popset 1,230 676
Conserved Domains 46 33
GEO Datasets 6,912 4
PubMed Central 91,241 91,228
Gene 359,324 -
SRA Experiments 111,578 210
GEO Profiles 22,220 -
Protein Clusters 20,620 12,627
Identical Protein Groups 3,013,202 34,989
Bio Project 4,285 43
Bio Sample 115,207 155
Bio Systems 20,449 -
Assembly 8,010 -
Probe 796 11
PubChem BioAssay 10,609 32
Taxonomy 6,203 1

Comments and References:

Mycobacterium (LPSN link)
Gupta RS et al. (2018)
Gupta, R.S., Lo, B., and Son, J. "Phylogenomics and comparative genomic studies robustly support division of the genus Mycobacterium into an emended genus Mycobacterium and four novel genera." Front. Microbiol. (2018) 9:67. [Corrigendum: Front. Microbiol. (2019) 10:714. (PMID 31024493)]
Kim H et al. (2005)
Kim, H., Kim, S.-H., Shim, T.-S., Kim, M., Bai, G.-H., Park, Y.-G., Lee, S.-H., Chae, G.-T., Cha, C.-Y., Kook, Y.-H., and Kim, B.-J. "Differentiation of Mycobacterium species by analysis of the heat-shock protein 65 gene (hsp65)." Int. J. Syst. Evol. Microbiol. (2005) 55:1649-1656. Published online 27 May 2005. DOI 10.1099/ijs.0.63553-0
Levy-Frebault VV & Portaels F (1992)
Levy-Frebault, V.V., and Portaels, F. "Proposed minimal standards for the genus Mycobacterium and for description of new slowly growing Mycobacterium species." Int. J. Syst. Bacteriol. (1992) 42:315-323.
List of Changes in Taxonomic Opinion No. 28 (2018)
"Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2018) 68:2137-2138.
Luquin M et al. (1991)
Luquin, M., Laneelle, M.A., Ausina, V., Garcia Barcelo, M., Belda, F., Alonso, C., and Prats, G. "Distribution of a novel mycolic acid in species of the genus Mycobacterium." Int. J. Syst. Bacteriol. (1991) 41:390-394.
Ochi K (1995d)
Ochi, K. "Phylogenetic analysis of mycolic acid-containing wall-chemotype IV actinomycetes and allied taxa by partial sequencing of ribosomal protein AT-L30." Int. J. Syst. Bacteriol. (1995) 45:653-660.
Pitulle C et al. (1992)
Pitulle, C., Dorsch, M., Kazda, J., Wolters, J., and Stackebrandt, E. "Phylogeny of rapidly growing members of the genus Mycobacterium." Int. J. Syst. Bacteriol. (1992) 42:337-343.
Rogall T et al. (1990)
Rogall, T., Wolters, J., Flohr, T., Bottger, E.C. "Towards a phylogeny and definition of species at the molecular level within the genus Mycobacterium." Int. J. Syst. Bacteriol. (1990) 40:323-330.
Shivannavar CT et al. (1996)
Shivannavar, C.T., Katoch, V.M., Sharma, V.D., Patil, M.A., Katoch, K., Bharadwaj, V.P., Sharma, R.K., Bhatia, A.S., and Agrawal, B.M. "Determination of mycobacterial phylogeny on the basis of immunological relatedness of superoxide dismutases." Int. J. Syst. Bacteriol. (1996) 46:1164-1169.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Stone BB et al. (1995)
Stone, B.B., Nietupski, R.M., Breton, G.L., and Weisburg, W.G. "Comparison of Mycobacterium 23S rRNA sequences by high-temperature reverse transcription and PCR." Int. J. Syst. Bacteriol. (1995) 45:811-819.
Takewaki S et al. (1994)
Takewaki, S., Okuzumi, K., Manabe, I., Tanimura, M., Miyamura, K., Nakahara, K., Yazaki, Y., Ohkubo, A., and Nagai, R. "Nucleotide sequence comparison of the mycobacterial dnaJ gene and PCR-restriction fragment length polymorphism analysis for identification of mycobacterial species." Int. J. Syst. Bacteriol. (1994) 44:159-166.
Tortoli E et al. (2019), doi:10.1183/13993003.00795-2019
Tortoli, E., Brown-Elliott, B.A., Chalmers, J.D., Cirillo, D.M., Daley, C.L., Emler, S., Floto, R.A., Garcia, M.J., Hoefsloot, W., Koh, W.J., Lange, C., Loebinger, M., Maurer, F.P., Morimoto, K., Niemann, S., Richter, E., Turenne, C.Y., Vasireddy, R., Vasireddy, S., Wagner, D., Wallace, R.J. Jr,, Wengenack, N., and van Ingen, J. "Same meat, different gravy: ignore the new names of mycobacteria." Eur. Respir. J. (2019) 54(1):1900795.
Wayne LG et al. (1991)
Wayne, L.G., Good, R.C., Krichevsky, M.I., Blacklock, Z., David, H.L., Dawson, D., Gross, W., Hawkins, J., Levy-Frebault, V.V., McManus, C., et al. "Fourth report of the cooperative, open-ended study of slowly growing mycobacteria by the International Working Group on Mycobacterial Taxonomy." Int. J. Syst. Bacteriol. (1991) 41:463-472.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Mycobacterium taxonomy/phylogenetic Encyclopedia of life
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
4 records from this provider organism-specific Integrated Microbial Genomes
Mycobacterium Aronson taxonomy/phylogenetic Integrated Taxonomic Information System
Mycobacterium taxonomy/phylogenetic Lifemap
RIDOM Mycobacteria project taxonomy/phylogenetic NCBI taxonomy bookmarks
Mycobacterium Aronson taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.
Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. [Full text] [PubMed]


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