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Taxonomy browser (Spirochaetota)

Spirochaetota

Taxonomy ID: 203691 (for references in articles please use NCBI:txid203691)
current name
Spirochaetota corig. Garrity and Holt 2021 in [Oren A & Garrity GM (2021)]
homotypic synonym:
"Spirochaetes" Garrity and Holt 2001, effective name 1) in [Garrity GM & Holt JG (2001)]
"Spirochaetaeota" Oren et al. 2015, effective name, orth. var. 1),2) in [Oren A et al. (2015)]
equivalent:
Spirochaetes
NCBI BLAST name: bacteria
Rank: phylum
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Spirochaetae
Lineage( full )
cellular organisms; Bacteria
   Entrez records   
Database name Subtree links Direct links
Nucleotide 589,612 -
Protein 5,206,515 -
Structure 362 -
Genome 342 -
Popset 1,801 360
Conserved Domains 198 3
GEO Datasets 704 -
PubMed Central 44,119 6,168
Gene 298,208 -
SRA Experiments 10,951 94
GEO Profiles 77,470 -
Protein Clusters 32,102 -
Identical Protein Groups 5,464,299 -
BioProject 1,340 2
BioSample 19,900 94
Assembly 7,446 -
Genetic Testing Registry 1 -
PubChem BioAssay 122 -
Taxonomy 3,688 1

Notes:

Comments and References:

Oren A & Garrity GM (2021), PubMed: abstract
Oren, A., and Garrity, G.M. "Valid publication of the names of forty-two phyla of prokaryotes." Int. J. Syst. Evol. Microbiol. (2021) 71(10):005056.
Garrity GM & Holt JG (2001)
Garrity, G.M., and Holt, J.G. "The Road Map to the Manual." In: Bergey's Manual of Systematic Bacteriology, 2nd ed., vol. 1 (The Archaea and the deeply branching and phototrophic Bacteria) (D.R. Boone and R.W. Castenholz, eds.), Springer-Verlag, New York (2001). p. 119-166. [No PubMed record available.]
Oren A et al. (2015), PubMed: abstract
Oren, A., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rosselló-Móra, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Whitman, W.B. "Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes." Int. J. Syst. Evol. Microbiol. (2015) 65(11):4284-4287.
Cavalier-Smith T (2002)
Cavalier-Smith, T. "The neomuran origin of archaebacteria, the negibacterial root of the universal tree and bacterial megaclassification." Int. J. Syst. Evol. Microbiol. (2002) 52(1):7-76.
Whitman WB et al. (2018)
Whitman, W.B., Oren, A., Chuvochina, M., da Costa, M.S., Garrity, G.M., Rainey, F.A., Rossello-Mora, R., Schink, B., Sutcliffe, I., Trujillo, M.E., and Ventura, S. "Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'." Int. J. Syst. Evol. Microbiol. (2018) 68(3):967-969.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Spirochaetes taxonomy/phylogenetic Encyclopedia of life
27 records from this provider organism-specific Integrated Microbial Genomes
Spirochaetes taxonomy/phylogenetic Lifemap
Spirochaetes Cavalier-Smith, 2002 taxonomy/phylogenetic Ocean Biogeographic Information System
Spirochaetes Cavalier-Smith, 2002 taxonomy/phylogenetic World Register of Marine Species
Notes:
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A list of our current non-bibliographic LinkOut providers can be found here.

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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