Taxonomy browser (Paracoccus denitrificans)

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Taxonomy browser (Paracoccus denitrificans)

Paracoccus denitrificans

Taxonomy ID: 266 (for references in articles please use NCBI:txid266)

current name

Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980) emend. Rainey et al. 1999, nom. approb.¹⁾

type strain of Paracoccus denitrificans: ATCC :17741, DSM :413, JCM :21484, LMD:22.21, NBRC :102528, NCCB:22021, personal::Stanier 381, ATCC :19367

homotypic synonym:

Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980) emend. Nokhal and Schlegel 1983, nom. approb.²⁾

Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980) emend. Ludwig et al. 1993, nom. approb.³⁾

Micrococcus denitrificans

NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Paracoccaceae; Paracoccus

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	12,291	6,103	2,746
Protein	60,710	54,964	-
Structure	137	90	-
Genome	1	1	-
Popset	5	5	-
GEO Datasets	32	20	-
PubMed Central	1,888	1,888	-
Gene	10,428	1	-
SRA Experiments	153	67	-
Protein Clusters	3,534	3,534	-
Identical Protein Groups	21,034	20,449	-
BioProject	39	28	-
BioSample	193	131	12
Assembly	18	14	4
PubChem BioAssay	9	8	-
Taxonomy	4	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
3) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

Beijerinck MW & Minkman DCJ (1910)

Beijerinck, M.W., and Minkman, D.C.J.: Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene. Abteilung II. (1910) 25:30-63. [No PubMed record available.]

Davis DH et al. (1969)

Davis, D.H., Doudoroff, M., Stanier, R.Y., and Mandel, M. "Proposal to reject the genus Hydrogenomonas: Taxonomic implications." Int. J. Syst. Bacteriol. (1969) 19:375-390. [No PubMed record available.]

Kelly DP et al. (2006)

Kelly, D.P., Euzeby, J.P., Goodhew, C.F., and Wood, A.P. "Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections." Int. J. Syst. Evol. Microbiol. (2006) 56:2495-500. [Erratum: Int. J. Syst. Evol. Microbiol. (2007) 57:198.]

Ludwig W et al. (1993)

Ludwig, W., Mittenhuber, G., and Friedrich, C.G. "Transfer of Thiosphaera pantotropha to Paracoccus denitrificans." Int. J. Syst. Bacteriol. (1993) 43:363-367.

Nokhal TH & Schlegel HG (1983)

Nokhal, T.H., and Schlegel, H.G. "Taxonomic study of Paracoccus denitrificans." Int. J. Syst. Bacteriol. (1983) 33:26-37. [No PubMed record available.]

Rainey FA et al. (1999)

Rainey, F.A., Kelly, D.P., Stackebrandt, E., Burghardt, J., Hiraishi, A., Katayama, Y., and Wood, A.P. "A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov." Int. J. Syst. Bacteriol. (1999) 49:645-651.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Paracoccus denitrificans	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980)	taxonomy/phylogenetic	Encyclopedia of life
3 records from this provider	organism-specific	Genomes On Line Database
2 records from this provider	culture/stock collections	Global Catalogue of Microorganisms
Related Immune Epitope Information	gene/protein/disease-specific	Immune Epitope Database and Analysis Resource
6 records from this provider	organism-specific	Integrated Microbial Genomes
Wikipedia	taxonomy/phylogenetic	iPhylo

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
3BR12 [1]	71.11T [3 3]	96 [1]	97 [1]
AC-3 [1]	ATCC 13543 [1 4]	ATCC 17741 [4 1 1]	ATCC 17741T [1]
ATCC 19367 [1 8 176 4972]	BDU SRS1 [1]	C5 [1]	DN23 [3 3]
DSM 104981 [1 1 98]	DSM 2944 [1]	DSM 413 [1 1 198 5105]	DSM 415 [1 1 183 5103]
DSM413 strain DSM 413 [1 1 198 5105]	DYTN-1 [1 6 5029]	E4 [1]	EM1005 [1 1]
EM1006 [1 1]	EM1016 [1 1]	EM1022 [1 1]	EM1026 [1 1]
EM1032 [1 1]	EM1043 [1 1]	EM1050 [1 1]	EM1065 [1 1]
EM1087 [1 1]	EM1114 [1 1]	EM2011 [1 1]	EM2020 [1 1]
EM2035 [1 1]	EM2064 [1 1]	FI34 [1 1]	G-30 [1]
G11 [2 1]	GB17 [352 2 16 1]	GB17/ATCC 35512/LMD 82.5 [1 1]	HAMBI 2443 [1 7 5054 2]
HAMBI_2443 [1 7 5054 2]	HY-1 [1]	IAM 12479 [2]	IAM12479 strain IAM 12479 [2]
IFO 12442 [1 1]	IFO 13301 [1 1]	ISTOD1 [1 1 130 2]	JCM6892 [1]
KMGL1309-SO7 [1 1]	LMD 22.1T [1]	LMD 92.63 [1 1]	LMD82.5 [2 11]
LMG 4049 [2 2]	LMG 4218 T [2]	M-1 [1]	MCCB 372 [1 1]
MKU1 strain MKU1 [1 1 487 5025 1] of Paracoccus sp. MKU1	NAM10B [1]	NBRC 102528 [1 2 326 4976]	NBRC 12442 [1 1]
NBRC 13301 [1 4 3]	NBRC 14910 [1 1]	NCIB 11627 [1 2]	NCIB 8944 [1 3]
NCIMB 8944 [1 1]	NKNIS [2 14]	NL1B8944 [1 4]	NL8 [1]
P-87 [2]	PD1222 strain PD1222 [6 37 26 1 5153 62] of Paracoccus denitrificans PD1222	PD1235 [2 6]	PJ-1 [1]
Pr [2]	Pr3 [1]	R-1 [1 1 6 4713]	S1657 [1 4]
SDT1S7 [1]	SDT1S8 [1]	SDT2S8 [1]	SDT3S8 [1]
SOB-1 [1]	SSJ [1]	SSS01 [1]	UASWS0998 [1]
UASWS1006 [1]	WXY [2]	YB [1]	YB2 [1]
YC [1]	YPT65 [1 1]	dNF-2 [1]	fusant PF-P1 [1]
wild type [2 4]
isolate
E4 [1]	NKNIS [1]	PAR392 [4385]	Pd1222 strain PD1222 [6 37 26 1 5153 62] of Paracoccus denitrificans PD1222
S2_012_000_R3_94 [1 99 3959]	S2_018_000_R3_111 [1 115 3002]	S2_018_000_R3_116 [1 115 3002]
sub-species
PD1222 strain PD1222 [6 37 26 1 5153 62] of Paracoccus denitrificans PD1222
culture-collection
ATCC:17741 [4 1 1]	ATCC:19367 [1 169 1]	DSM:104981 [1 98 1]	NBRC:102528 [1 2]
NBRC:12442 [1 1]	NBRC:13301 [1 4 3]	NBRC:14910 [1 1]

Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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