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Taxonomy browser (Paracoccus denitrificans)

Paracoccus denitrificans

Taxonomy ID: 266 (for references in articles please use NCBI:txid266)
current name
Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980) emend. Rainey et al. 1999, nom. approb. 1)
type strain of Paracoccus denitrificans: ATCC:17741, DSM:413, JCM:21484, LMD:22.21, NBRC:102528, NCCB:22021, personal::Stanier 381
homotypic synonym:
Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980) emend. Nokhal and Schlegel 1983, nom. approb. 1)
Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980) emend. Ludwig et al. 1993, nom. approb. 1)
Micrococcus denitrificans
NCBI BLAST name: a-proteobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus
   Entrez records   
Database name Subtree links Direct links
Nucleotide 7,609 1,413
Protein 45,232 39,510
Structure 129 87
Genome 1 1
Popset 5 5
GEO Datasets 20 8
PubMed Central 1,497 1,497
Gene 5,179 1
SRA Experiments 79 17
Protein Clusters 3,534 3,534
Identical Protein Groups 17,514 17,034
Bio Project 25 17
Bio Sample 64 25
Bio Systems 259 -
Assembly 12 8
Probe 15 15
PubChem BioAssay 6 6
Taxonomy 4 1

Notes:

Comments and References:

Beijerinck MW & Minkman DCJ (1910)
Beijerinck, M.W., and Minkman, D.C.J.: Zentralblatt fur Bakteriologie, Parasitenkunde, Infektionskrankheiten und Hygiene. Abteilung II. (1910) 25:30-63. [No PubMed record available.]
Davis DH et al. (1969)
Davis, D.H., Doudoroff, M., Stanier, R.Y., and Mandel, M. "Proposal to reject the genus Hydrogenomonas: Taxonomic implications." Int. J. Syst. Bacteriol. (1969) 19:375-390. [No PubMed record available.]
Kelly DP et al. (2006)
Kelly, D.P., Euzeby, J.P., Goodhew, C.F., and Wood, A.P. "Redefining Paracoccus denitrificans and Paracoccus pantotrophus and the case for a reassessment of the strains held by international culture collections." Int. J. Syst. Evol. Microbiol. (2006) 56:2495-500. [Erratum: Int. J. Syst. Evol. Microbiol. (2007) 57:198.]
Ludwig W et al. (1993)
Ludwig, W., Mittenhuber, G., and Friedrich, C.G. "Transfer of Thiosphaera pantotropha to Paracoccus denitrificans." Int. J. Syst. Bacteriol. (1993) 43:363-367.
Nokhal TH & Schlegel HG (1983)
Nokhal, T.H., and Schlegel, H.G. "Taxonomic study of Paracoccus denitrificans." Int. J. Syst. Bacteriol. (1983) 33:26-37. [No PubMed record available.]
Rainey FA et al. (1999)
Rainey, F.A., Kelly, D.P., Stackebrandt, E., Burghardt, J., Hiraishi, A., Katayama, Y., and Wood, A.P. "A re-evaluation of the taxonomy of Paracoccus denitrificans and a proposal for the combination Paracoccus pantotrophus comb. nov." Int. J. Syst. Bacteriol. (1999) 49:645-651.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Paracoccus denitrificans meta-databases BacDive
Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969 (Approved Lists 1980) taxonomy/phylogenetic Encyclopedia of life
3 records from this provider organism-specific Genomes On Line Database
2 records from this provider culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
4 records from this provider organism-specific Integrated Microbial Genomes
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
71.11T [3 3] 96 [1] 97 [1] ATCC 13543 [1 4]
ATCC 17741 [4 1 1] ATCC 17741T [1] ATCC 19367 [2] BDU SRS1 [1]
C5 [1] DN23 [3 3] DSM 2944 [1] DSM 413 [195 5099]
DSM 415 [183 5103] DSM413 strain DSM 413 [195 5099] E4 [1] EM1005 [1 1]
EM1006 [1 1] EM1016 [1 1] EM1022 [1 1] EM1026 [1 1]
EM1032 [1 1] EM1043 [1 1] EM1050 [1 1] EM1065 [1 1]
EM1087 [1 1] EM1114 [1 1] EM2011 [1 1] EM2020 [1 1]
EM2035 [1 1] EM2064 [1 1] FI34 [1 1] G-30 [1]
G11 [2 1] GB17 [2 16 2] GB17/ATCC 35512/LMD 82.5 [1 1] HAMBI 2443 [1]
IAM 12479 [2] IAM12479 strain IAM 12479 [2] IFO 12442 [1 1] IFO 13301 [1 1]
ISTOD1 [128] JCM6892 [1] KMGL1309-SO7 [1 1] LMD 22.1T [1]
LMD 92.63 [1 1] LMD82.5 [2 11] LMG 4049 [2 2] LMG 4218 T [2]
M-1 [1] MCCB 372 [1 1] MKU1 strain MKU1 [487 5025] of Paracoccus sp. MKU1 NAM10B [1]
NBRC 102528 [2] NBRC 12442 [1] NBRC 13301 [4 3] NBRC 14910 [1]
NCIB 11627 [1 2] NCIB 8944 [1 3] NCIMB 8944 [1 1] NKNIS [2 14]
NL1B8944 [1 4] NL8 [1] P-87 [2] PD1222 strain PD1222 [27 1 5153] of Paracoccus denitrificans PD1222
PD1235 [2 6] S1657 [1 4] SDT1S7 [1] SDT1S8 [1]
SDT2S8 [1] SDT3S8 [1] SSS01 [1] UASWS0998 [1]
UASWS1006 [1] YB [1] YB2 [1] YC [1]
YPT65 [1 1] fusant PF-P1 [1] wild type [2 4]
isolate
E4 [1] NKNIS [1] Pd1222 strain PD1222 [27 1 5153] of Paracoccus denitrificans PD1222 S2_018_000_R3_111 [115 3002]
S2_018_000_R3_116 [115 3002]
sub-species
PD1222 strain PD1222 [27 1 5153] of Paracoccus denitrificans PD1222


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