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Taxonomy browser (Phytophthora nicotianae)

Phytophthora nicotianae

Taxonomy ID: 4792 (for references in articles please use NCBI:txid4792)
current name
Phytophthora nicotianae Breda de Haan, 1896
epitype of Phytophthora nicotianae: CBS:H-25075
culture from epitype of Phytophthora nicotianae: CBS:149823, NRRL:64371
Genbank common name: black shank of tobacco agent
NCBI BLAST name: downy mildews
Rank: species
Genetic code: Translation table 1 (Standard)
Mitochondrial genetic code: Translation table 1 (Standard)
Plastid genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Phytophthora parasitica Dastur, 1913
heterotypic synonym
Phytophthora parasitica var. nicotianae Tucker, 1931
heterotypic synonym
Phytophthora parasitica var. piperina Dastur, 1935
heterotypic synonym
Phytophthora nicotianae var. parasitica (Dastur) G.M. Waterh., 1963
common name(s) brown rot and root rot of citrus agent, buckeye rot agent, pineapple heart rot agent, pistachio foot rot agent, sesame blight agent
Lineage( full )
cellular organisms; Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 92,922 46,954 19
Protein 305,457 137,262 -
Structure 1 - -
Genome 1 1 -
Popset 231 227 -
Conserved Domains 1 1 -
GEO Datasets 51 37 -
PubMed Central 1,298 1,009 -
Gene 23,307 66 -
SRA Experiments 177 150 -
Identical Protein Groups 155,412 88,516 -
BioProject 34 27 -
BioSample 161 148 -
Assembly 14 8 -
PubChem BioAssay 6 5 -
Taxonomy 6 1 -

Comments and References:

Abad ZG et al. 2023, doi:10.3114/sim.2023.106.05
Abad, ZG, Burgess TI, Bourret, T, Bensch K, Cacciola SO, Scanu B, Mathew R, Kasiborski B, Srivastava S, Kageyama K, Bienapfl JC, Verkleij G, Broders K, Schena L, Redford AJ. 2023. Phytophthora: taxonomic and phylogenetic revision of the genus. Studies in Mycology

Genome Information

Go to NCBI genomic BLAST page for Phytophthora nicotianae

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
5 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Phytophthora parasitica culture/stock collections Global Catalogue of Microorganisms
Phytophthora parasitica Dastur 1913 taxonomy/phylogenetic Index Fungorum
2 records from this provider taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Phytophthora parasitica taxonomy/phylogenetic Systematic Mycology and Microbiology Laboratory, Fungal Databases
WebScipio: Phytophthora parasitica organism-specific WebScipio - eukaryotic gene identification
diArk: Phytophthora parasitica organism-specific diArk - a resource for eukaryotic genome research
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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