Taxonomy browser (Pectobacterium atrosepticum)

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Taxonomy browser (Pectobacterium atrosepticum)

Pectobacterium atrosepticum

Taxonomy ID: 29471 (for references in articles please use NCBI:txid29471)

current name

Pectobacterium atrosepticum (van Hall 1902) Gardan et al. 2003

type strain of Pectobacterium atrosepticum: ATCC :33260, CFBP:1526, CIP:105192, ICMP :1526, BCCM/LMG :2386, NCPPB:549, DSM :18077, personal::G/39, CECT:314, BCRC:13196, ICPB:EA172

homotypic synonym:

"Bacillus atrosepticus" van Hall 1902, effective name¹⁾

"Erwinia atroseptica" (van Hall 1902) Jennison 1923, effective name²⁾

"Bacterium atrosepticum" (van Hall 1902) Lehmann and Neumann 1927, effective name³⁾

"Pectobacterium atrosepticum" (van Hall 1902) Patel and Kulkarni 1951, effective name⁴⁾

"Bacterium cartovorum var. atrosepticum" Hellmers and Dowson 1953, effective name⁵⁾

"Pectobacterium carotovorum var. atrosepticum" Hellmers and Dowson 1957, effective name⁶⁾

"Erwinia carotovora var. atroseptica" (Hellmers and Dowson 1953) Dye 1969, effective name⁷⁾

Erwinia carotovora subsp. atroseptica (van Hall 1902) Dye 1969 (Approved Lists 1980), nom. approb.⁸⁾

Pectobacterium carotovorum subsp. atrosepticum (van Hall 1902) Hauben et al. 1999

Erwinia caratovora subsp. atroseptica

Erwinia carotovora atroseptica

NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)

Lineage( full ): cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	3,762	2,862	236
Protein	60,522	49,972	-
Structure	42	14	-
Genome	1	1	-
Popset	87	87	-
Conserved Domains	2	2	-
GEO Datasets	51	18	-
PubMed Central	769	769	-
Gene	13,833	9,070	-
SRA Experiments	408	381	-
Protein Clusters	3,304	3,304	-
Identical Protein Groups	18,914	18,160	-
BioProject	36	23	-
BioSample	98	71	3
Assembly	24	21	3
PubChem BioAssay	5	5	-
Taxonomy	5	1	-

Notes:

1) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
4) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
5) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
6) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
7) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
8) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.

Comments and References:

Dye DW (1969)

Dye, D.W. "A taxonomic study of the genus Erwinia." N. Z. J. Sci. Technol. (1969) 12:223-236. [No PubMed record available.]

Gardan L et al. (2003)

Gardan, L., Gouy, C., Christen, R., and Samson, R. "Elevation of three subspecies of Pectobacterium carotovorum to species level: Pectobacterium atrosepticum sp. nov., Pectobacterium betavasculorum sp. nov. and Pectobacterium wasabiae sp. nov." Int. J. Syst. Evol. Microbiol. (2003) 53:449-454.

Hauben L et al. (1998)

Hauben, L., Moore, E.R.B., Vauterin, L., Steenackers, M., Mergaert, J., Verdonck, L., and Swings, J. "Phylogenetic position of phytopathogens within the Enterobacteriaceae." Syst. Appl. Microbiol. (1998) 21:384-397.

Hellmers E & Dowson WJ (1953)

Hellmers E., and Dowson, W.J. "Further investigations of potato blackleg." Acta Agr. Scand. (1953) 3:103-112. [No PubMed record available.]

Jennison HM (1923)

Jennison, H.M. "Potato blackleg with special reference to the etiological agent." Ann. Rep. Mo. Bot. Gard. (1923) 10:1-72. [No PubMed record available.]

Lehmann KB & Neumann R (1927)

Lehmann, K.B., and Neumann, R. Bakteriologie insbesondere Bakteriologische Diagnostik. II. Allgmeine und spezielle Bakteriologie 7 Aufl. (1927) J.F. Lehmann, Munchen. [No PubMed record available.]

Patel MK & Kulkarni YS (1951)

Patel, M.K., and Kulkarni. Y.S. "Nomenclature of bacterial plant pathogens." Indian Phytopathol. (1951) 4:74-84. [No PubMed record available.]

Skerman VBD et al. (1980) (Erwinia carotovora subsp. atroseptica)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors): "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420.

VALIDATION LIST No. 68 (1999) (Pectobacterium carotovorum subsp. atrosepticum)

VALIDATION LIST No. 68. Int. J. Syst. Bacteriol. (1999) 49:1-3.

van Hall CJJ (1902)

van Hall, C.J.J. Bijdragen tot de kennis der Bakterieele Plantenziekten. Inaug. Diss. (1902), Amsterdam. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Pectobacterium atrosepticum	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
Erwinia carotovora subsp. atroseptica (van Hall 1902) Dye 1969 (Approved Lists 1980).	taxonomy/phylogenetic	Encyclopedia of life
4 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Pectobacterium atrosepticum	culture/stock collections	Global Catalogue of Microorganisms
7 records from this provider	organism-specific	Integrated Microbial Genomes
Erwinia carotovora var. atroseptica	taxonomy/phylogenetic	Systematic Mycology and Microbiology Laboratory, Fungal Databases

Notes:: Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov

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