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Taxonomy browser (Nitrosomonadales)

Nitrosomonadales

Taxonomy ID: 32003 (for references in articles please use NCBI:txid32003)
current name
Nitrosomonadales Garrity et al. 2006 emend. Boden et al. 2017
includes:
"Gallionellales" Weiss et al. 2007, effective name 1)
"Sulfuricellales" Watanabe et al. 2014, effective name 2)
Methylophilales Garrity et al. 2006
Sulfuricellales Watanabe et al. 2015
NCBI BLAST name: b-proteobacteria
Rank: order
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Ammonia oxidizing bacteria
heterotypic synonym
Ammonia-oxidizing bacteria
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Betaproteobacteria
   Entrez records   
Database name Subtree links Direct links
Nucleotide 98,623 1
Protein 1,479,575 8
Structure 157 -
Genome 193 -
Popset 633 531
Conserved Domains 5 -
GEO Datasets 257 -
PubMed Central 7,814 497
Gene 58,950 -
SRA Experiments 825 54
GEO Profiles 6,990 -
Protein Clusters 13,904 -
Identical Protein Groups 2,270,784 8
BioProject 489 6
BioSample 3,915 69
Assembly 2,479 -
PubChem BioAssay 24 -
Taxonomy 1,624 1

Notes:

Comments and References:

Aakra A et al. (1999)
Aakra, A., Utaker, J.B., and Nes, I.F. "RFLP of rRNA genes and sequencing of the 16S-23S rDNA intergenic spacer region of ammonia-oxidizing bacteria: a phylogenetic approach." Int. J. Syst. Bacteriol. (1999) 49:123-130.
Aakra A et al. (2001)
Aakra, A., Utaker, J.B., Pommerening-Roser, A., Koops, H.P., and Nes, I.F. "Detailed phylogeny of ammonia-oxidizing bacteria determined by rDNA sequences and DNA homology values." Int. J. Syst. Evol. Microbiol. (2001) 51:2021-2030.
Boden R et al. (2017b)
Boden, R., Hutt, L.P., and Rae, A.W. "Reclassification of Thiobacillus aquaesulis (Wood & Kelly, 1995) as Annwoodia aquaesulis gen. nov., comb. nov., transfer of Thiobacillus (Beijerinck, 1904) from the Hydrogenophilales to the Nitrosomonadales, proposal of Hydrogenophilalia class. nov. within the 'Proteobacteria', and four new families within the orders Nitrosomonadales and Rhodocyclales." Int. J. Syst. Evol. Microbiol. (2017) 67(5):1191-1205.
Garrity GM et al. (2005ab)
Garrity, G.M., Bell, J.A., and Lilburn, T. "Order III. Methylophilales ord. nov." In: D.J. Brenner, N.R. Krieg, J.T. Staley, and G.M. Garrity (eds), Bergeys Manual of Systematic Bacteriology, second edition, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, 2005, p. 770. [No PubMed record available.]
Garrity GM et al. (2005ad)
Garrity, G.M., Bell, J.A., and Lilburn, T. "Order V. Nitrosomonadales ord. nov." In: D.J. Brenner,, N.R. Krieg, J.T. Staley, and G. M. Garrity (eds), Bergeys Manual of Systematic Bacteriology, second edition, vol. 2 (The Proteobacteria), part C (The Alpha-, Beta-, Delta-, and Epsilonproteobacteria), Springer, New York, 2005, p. 863. [No PubMed record available.]
VALIDATION LIST No. 107 (2006), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.64188-0
Validation List No. 107. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2006) 56:1-6. [Erratum: Int. J. Syst. Evol. Microbiol. (2006) 56:677.]
VALIDATION LIST No. 107 (2006) (Methylophilales), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.64188-0
Validation List No. 107. "List of new names and new combinations previously effectively, but not validly, published." Int. J. Syst. Evol. Microbiol. (2006) 56:1-6. [Erratum: Int. J. Syst. Evol. Microbiol. (2006) 56:677.]
Watanabe T et al. (2014)
Watanabe, T., Kojima, H., and Fukui, M. "Complete genomes of freshwater sulfur oxidizers Sulfuricella denitrificans skB26 and Sulfuritalea hydrogenivorans sk43H: Genetic insights into the sulfur oxidation pathway of betaproteobacteria." Syst. Appl. Microbiol. (2014) 37:387-395.
Watanabe T et al. (2015)
Watanabe, T., Kojima, H., and Fukui, M. "Sulfuriferula multivorans gen. nov., sp. nov., isolated from a freshwater lake, reclassification of 'Thiobacillus plumbophilus' as Sulfuriferula plumbophilus sp. nov., and description of Sulfuricellaceae fam. nov. and Sulfuricellales ord. nov." Int. J. Syst. Evol. Microbiol. (2015) 65(5):1504-1508.
Weiss J et al. (2007)
Weiss, J., Rentz, J., Todd, P., Neubauer, S., Merrill-Floyd, M., Lilburn, T., Bradburne, C., Megonigal, J.P., and Emerson, D. "Characterization of neutrophilic Fe(II)-oxidizing bacteria isolated from the rhizosphere of wetland plants and description of Ferritrophicum radicicola gen. nov. sp. nov., and Sideroxydans paludicola sp. nov." Geomicrobiol. J. (2007) 24:559-570. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Nitrosomonadales taxonomy/phylogenetic Encyclopedia of life
2619618857: Nitrosomonadales sp. genome_bin_20 organism-specific Integrated Microbial Genomes
Nitrosomonadales taxonomy/phylogenetic Lifemap
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Nitrosomonadales taxonomy/phylogenetic Ocean Biogeographic Information System
Nitrosomonadales taxonomy/phylogenetic World Register of Marine Species
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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