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Taxonomy browser (Yersinia pseudotuberculosis)

Yersinia pseudotuberculosis

Taxonomy ID: 633 (for references in articles please use NCBI:txid633)
current name
Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980), nom. approb. 1)
type strain of Yersinia pseudotuberculosis: ATCC:29833, CCUG:5855, CIP:55.85, DSM:8992, JCM:1676, NCTC:10275, NBRC:105692
homotypic synonym:
"Bacterium pseudotuberculosis" (Pfeiffer 1889) Migula 1900, effective name 2)
"Pasteurella pseudotuberculosis" (Pfeiffer 1889) Topley and Wilson 1929, effective name 2)
"Shigella pseudotuberculosis" (Pfeiffer 1889) Haupt 1935, effective name 2)
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacillus pseudotuberkulosis" (sic) Pfeiffer 1889, effective name 2)
heterotypic synonym
Pasteurella lymphangitidis Sneath and Stevens 1990
type strain of Pasteurella lymphangitidis: ATCC:49635, CCUG:27188, CIP:103823, NCTC:10547, personal::A82, personal::Jayaraman strain I, DSM:22972
Lineage( full )
cellular organisms; Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pseudotuberculosis complex
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 74,569 70,040 414
Protein 326,210 294,152 -
Structure 71 37 -
Genome 1 1 -
Popset 54 54 -
Conserved Domains 2 2 -
GEO Datasets 297 249 -
PubMed Central 4,432 4,432 -
Gene 26,569 4,745 -
SRA Experiments 1,227 992 -
Protein Clusters 1,784 1,784 -
Identical Protein Groups 51,054 50,080 -
BioProject 116 79 -
BioSample 1,222 1,039 11
Assembly 329 314 2
PubChem BioAssay 112 94 -
Taxonomy 19 1 -

Notes:

Comments and References:

Gaillot O et al. (2013)
Gaillot, O., Lemenand, O., Marceau, M., and Simonet, M. "Proposed reclassification of Pasteurella lymphangitidis Sneath & Stevens 1990 as Yersinia pseudotuberculosis." Int. J. Syst. Evol. Microbiol. (2013) 63:3927-3929.
Haupt H (1935)
Haupt, H. "Zur Systematik der Bakterien. Die fur Mensch und Tier pathogenen gram-negativen alkali-bildenden Stabchen-bakterien (Aerobactereae Pribram 1929 em.)" Ergeb. Hyg. Bakteriol. (1935) 17:175-230. [No PubMed record available.]
ICSB (1991b)
ICSB, Subcommittee on Pasteurellaceae and Related Organisms: "Minutes on the meeting, 17 September 1990, Osaka, Japan." Int. J. Syst. Bacteriol. (1991) 41:592. (Note: in minute 8 -- "Pasteurella lymphagitidis has been shown by De Ley et al. to belong in the family Enterobactericeae and should not be included in the Pasteurellaceae.") [No PubMed record available.]
Migula W (1900)
Migula, W. System der Bakterien, Vol. 2. (1900) Gustav Fischer, Jena. [No PubMed record available.]
Pfeiffer A (1889)
Pfeiffer, A. Ueber die bacillare Pseudotuberkulose bei Nagethieren. (1889) Thieme, Leipzig.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Sneath PHA & Stevens M (1990)
Sneath, P.H., and Stevens, M. "Actinobacillus rossii sp. nov., Actinobacillus seminis sp. nov., nom. rev., Pasteurella bettii sp. nov., Pasteurella lymphangitidis sp. nov., Pasteurella mairi sp. nov., and Pasteurella trehalosi sp. nov." Int. J. Syst. Bacteriol. (1990) 40:148-153.
Smith JE & Thal E (1965)
Smith, J.E., and Thal, E. "A taxonomic study of the genus Pasteurella using a numerical technique." Acta Pathol. Microbiol. Scand. (1965) 64:213-223.
Topley WWC & Wilson GS (1929)
Topley, W.W.C., and Wilson, G.S. The Principles of Bacteriology and Immunity, 1st ed. (1929) Edward Arnold and Co., London, pp. 1-587. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Yersinia pseudotuberculosis meta-databases BacDive
22 records from this provider organism-specific BioCyc
10 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Yersinia pseudotuberculosis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
49 records from this provider organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
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Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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