Link to NCBI Front Page Taxonomy Logo
Entrez PubMed Nucleotide Protein Genome Structure PMC Taxonomy BioCollections
   
Taxonomy browser (Yersinia pseudotuberculosis)

Yersinia pseudotuberculosis

Taxonomy ID: 633 (for references in articles please use NCBI:txid633)
current name
Yersinia pseudotuberculosis (Pfeiffer 1889) Smith and Thal 1965 (Approved Lists 1980), nom. approb. 1)
type strain of Yersinia pseudotuberculosis: ATCC:29833, CCUG:5855, CIP:55.85, DSM:8992, JCM:1676, NCTC:10275
homotypic synonym:
"Bacterium pseudotuberculosis" (Pfeiffer 1889) Migula 1900, effective name 2)
"Pasteurella pseudotuberculosis" (Pfeiffer 1889) Topley and Wilson 1929, effective name 2)
"Shigella pseudotuberculosis" (Pfeiffer 1889) Haupt 1935, effective name 2)
NCBI BLAST name: enterobacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
"Bacillus pseudotuberkulosis" (sic) Pfeiffer 1889, effective name 2)
heterotypic synonym
Pasteurella lymphangitidis Sneath and Stevens 1990
type strain of Pasteurella lymphangitidis: ATCC:49635, CCUG:27188, CIP:103823, NCTC:10547, personal::A82, personal::Jayaraman strain I, DSM:22972
Lineage( full )
cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pseudotuberculosis complex
   Entrez records   
Database name Subtree links Direct links
Nucleotide 72,489 67,714
Protein 330,001 289,331
Structure 56 28
Genome 1 1
Popset 54 54
Conserved Domains 2 2
GEO Datasets 169 121
PubMed Central 3,169 3,169
Gene 18,087 679
SRA Experiments 867 649
Protein Clusters 1,784 1,784
Identical Protein Groups 50,616 49,060
Bio Project 71 35
Bio Sample 832 668
Bio Systems 2,961 1,183
Assembly 310 293
Probe 32 4
PubChem BioAssay 83 68
Taxonomy 19 1

Notes:

Comments and References:

Gaillot O et al. (2013)
Gaillot, O., Lemenand, O., Marceau, M., and Simonet, M. "Proposed reclassification of Pasteurella lymphangitidis Sneath & Stevens 1990 as Yersinia pseudotuberculosis." Int. J. Syst. Evol. Microbiol. (2013) 63:3927-3929.
Haupt H (1935)
Haupt, H. "Zur Systematik der Bakterien. Die fur Mensch und Tier pathogenen gram-negativen alkali-bildenden Stabchen-bakterien (Aerobactereae Pribram 1929 em.)" Ergeb. Hyg. Bakteriol. (1935) 17:175-230. [No PubMed record available.]
ICSB (1991b)
ICSB, Subcommittee on Pasteurellaceae and Related Organisms: "Minutes on the meeting, 17 September 1990, Osaka, Japan." Int. J. Syst. Bacteriol. (1991) 41:592. (Note: in minute 8 -- "Pasteurella lymphagitidis has been shown by De Ley et al. to belong in the family Enterobactericeae and should not be included in the Pasteurellaceae.") [No PubMed record available.]
Migula W (1900)
Migula, W. System der Bakterien, Vol. 2. (1900) Gustav Fischer, Jena. [No PubMed record available.]
Pfeiffer A (1889)
Pfeiffer, A. Ueber die bacillare Pseudotuberkulose bei Nagethieren. (1889) Thieme, Leipzig.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]
Sneath PHA & Stevens M (1990)
Sneath, P.H., and Stevens, M. "Actinobacillus rossii sp. nov., Actinobacillus seminis sp. nov., nom. rev., Pasteurella bettii sp. nov., Pasteurella lymphangitidis sp. nov., Pasteurella mairi sp. nov., and Pasteurella trehalosi sp. nov." Int. J. Syst. Bacteriol. (1990) 40:148-153.
Smith JE & Thal E (1965)
Smith, J.E., and Thal, E. "A taxonomic study of the genus Pasteurella using a numerical technique." Acta Pathol. Microbiol. Scand. (1965) 64:213-223.
Topley WWC & Wilson GS (1929)
Topley, W.W.C., and Wilson, G.S. The Principles of Bacteriology and Immunity, 1st ed. (1929) Edward Arnold and Co., London, pp. 1-587. [No PubMed record available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
2 records from this provider meta-databases BacDive
Yersinia pseudotuberculosis organism-specific BioCyc
10 records from this provider organism-specific Genomes On Line Database
Show Biotic Interactions taxonomy/phylogenetic Global Biotic Interactions
Yersinia pseudotuberculosis culture/stock collections Global Catalogue of Microorganisms
Related Immune Epitope Information gene/protein/disease-specific Immune Epitope Database and Analysis Resource
31 records from this provider organism-specific Integrated Microbial Genomes
Wikipedia taxonomy/phylogenetic iPhylo
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

To hide organism modifiers click here
strain
1 [2 2 4032] 1147 [1] 117 [2 1] 1186 [1 1]
1187 [1 1] 1189 [1 1] 12-219N1 strain 12-219N1 [3384] of Yersinia wautersii 1231 [172 4127]
141 [2 1 3] 141-D [1 1 2] 1442 [1 1] 14994/83 [3 3]
151 [2 14] 1603 [1 1] 197 [4 3] 204 [4 1]
2043 [1] 212 [1] 22917-2L [1] 22917/2L [2]
251-D [1 1 2] 257 [4] 260 [154 4032] 2660 [1]
274 [2 1] 2812/79 [1 1] 283 [3 3] 2883 [1 1]
2888 [168 4044] 2889 [3] 2893 [2 2 2] 2895 [3]
2B1 [3 3] 31830 [1 1] 31833 [1 1] 319 [1 1 1]
3260 [1 1] 32777 [3 109] 32777 (IP2777) [1 9] 32790 [1 1]
32817 [4 4] 32821 [1 1] 32889 [1 1] 32934 [4 4]
32937 [6 6] 32951 [1 1] 32953 [4 4] 354 [2 1]
379 [1] 414 [1 1 2] 43 [2 2 2] 43K.3 [3 3]
476 [3 3] 487/90 [1 13] 49 [2 1 1] 51 strain #51 [2435 6 6] of Yersinia wautersii
541 [1 1] 55023 [6 6] 553 [3 3] 6088 [3 13]
774 [2] 79136 [4] 83 [3 2] 8727/7 [2]
88-88 [4 4 4] 9314/74 [1 8] 93422 [6 1 22] A-17 [5 5 4]
A-2526 [1 1 2] A162.1K3 [3 3] A17 [1 1] AH [1 13]
ATCC 13979 [2 2 2] ATCC 27802 [2 2 2] ATCC 29833 [114 5 9] ATCC 4284 [48 4190]
ATCC 6904 [2 4113] ATCC 907 [5 1 4] AZ960106-1 [1] Ast.2 [1 1]
Ast.2618 [1 1 1] B56 [2] BB1152 [3] BB28 [3]
BJ01 [1] BJ02 [1 1] BJ03 [1 1] BJ04 [1 1]
BJ05 [1 1] BJ06 [1 1] BJ07 [1 1] BJ08 [1 1]
BJ09 [1 1] BJ10 [1 1] BJ11 [1 1] BJ12 [1 1]
BJ13 [1 1] BJ14 [1 1] BJ15 [1 1] BJ16 [1 1]
BJ17 [1 1] BJ18 [1 1] BJ19 [1 1] CCUG 17342 [2 2 2]
CCUG 17345 [2 2 2] CCUG 37903 [2 2 2] CCUG 5855 [6 5 4] CCUG 7803 [2 2 2]
CDC 542-84 [5 5 4] CDC 801-84 [5 5 4] CEB14_0017 [258] CEB85/0019 [1]
CIP2 [1 1] CN2 [3] CN3 [6 21] CN5 [2 2 2]
CN7 [2 2 2] CYP86-15 [1 1] D109 [1 1 1] D426 [3]
D54 [4] D585 [1 1 1] D64 [3 3 3] DC356-2 [2]
DD110 [3 1] DD11011 [1] DSM 8992 [3 2] ER 5271 [2 2 2]
F-401-1 [3] FDAARGOS_342 [2 4234] FDAARGOS_416 [8 4268] FE100991 [7]
FE100992 [7] FE100994 [6] FE73488 [6] FE81617 [7]
FE82911 [7] G4680 [2] G5431 [3] GTC 118 [1 1]
Gifu-liver [3] Group V [1 1] H-3152 [2] H-3831 [3]
H125/87 [1 16] H141/84 [3] H146/84K [2] H146/86 [1 1 1]
H1960003 [1] H305-36/89 [2 1 1] H346-36/89 [3 3] H450/86 [1 1 1]
H455/86 [1 16] H5N6.1.1K2D [3 3] H655-36/87 [1 1] H706/86 [2 1 1]
H715/86 [1 1 1] H720/86 [1 23] H722-36/88 [1 1 1] H892-36/87 [3]
IH111554 [272 4100] IP 2775 [1 1 1] IP 2777 [6 1 20] IP2666 [2 37]
IP2777 strain IP 2777 [6 1 20] IP30215 [1] IP30642 [1] IP31553 [2 1]
IP31758 [1 1 1] IP31833 [1] IP32463 [244 4340] IP32544 [112 3880]
IP32589 [1] IP32591 [1] IP32637 [4 204] IP32637-(HP1 deleted variant) [1]
IP32670 [171 4211] IP32777 [1 1] IP32802 [3] IP32881 [184 4333]
IP32884 [3] IP32887 [1] IP32921 [204 4344] IP32938 [92 3814]
IP32952 [2] IP32953 [7 5047 8] IP32993 [2] IP33038 [166 4281]
IP33054 [176 4078] IP33098 [1] IP33177 [168 3997] IP33178 [1]
IP33185 [1] IP33250 [175 4110] IP33278 [1] J5 [2 2 2]
J51 [3] J92 [3] Jayaraman 1 [2] K22 [1]
KM38(135/pCad) [5 5 2] KP1244-2B [2] Kuratani-2 [5 1 20] LE116.1K [3 3]
LFB2015M0M102/I1 [226 4105] LFB2015M0M69/I85 [408 4071] LFB2015M0M89/I60 [1534 3787] LFB2015M1M90/I8 [532 3927]
LFB2015W0M66/I75 [474 4111] LFB2015W0M68/I79 [318 4145] LFB2016M0M126/I13 [468 3940] LFB2016W1M129/I2 [300 3923]
M207 [456 4164] M489 [552 4128] M85 [1 3] M89 [354 4123]
MD67 [2 4054] MW1003-1 [1] MW101-1 [2] MW109-2 [208 4085]
MW145-2 [2] MW332-1 [1 1 1] MW41-2 [2] MW864-2 [1 1]
N912 [188 4177] N916 [3 2 3] NBRC 105692 [287 3878] NBT3L* [1 1]
NCTC 10275 [2] NCTC 10547 [5 5] NCTC 107275 [1 1] NCTC10278 [28 3783]
NCTC10547 [3 4152] NCTC10551 [4 4122] NCTC1101 [14 4162] NCTC1103 [16 4025]
NCTC8580 [6 4459] No.141 [2] No.151 [3] No.21 [3]
No.366 [1] No5 [192 4042] Nr.452/86 [2 1] OK10700 [1]
OK5439 [1] OK5466 [2] OK5489 [3] OK5586 [198 4219]
OK5608 [6 5 5] OK6011 [1] OK6088 [249 4214] P30 [3 3]
PB1 [15 6 8974] PC271 [1 1 1] PC504 [1] PC708 [2]
PC95-219-1 [2] PR1694-98 [1 1] PT245 [2] PT682 [216 4042]
PV696 [3 3] Pa3244 [1] Pa3422 [2] Pa3423 [5 2]
Pa3433 [6 6 6] Pa3606 [10 4129] Pa8728 [2] Ph3D [2 2]
Ph512 [4 3] R 1505 [1] R 708 LY [1] R-104 [1 1]
R103-1 [3] R103-2 [1] R104-2 [3] R1075-1 [1 1 1]
R111 [3] R2072Ly [4 4 4] R2096-2 [1] R220 [1]
R30 [3] R30-2 [1] R626R [1] R708Ly [1 1 1]
R80 [3 19] R819 [214 4164] R878 [1 1 1] R926 [5 5 5]
RD20 [3] RD23 [2] Rister [2] S107 [6 3]
S109 [1 1 1] S53B1-3/IIIC [3 3] SP-940613 [1] SP-940616 [1 1 1]
SP93422 [360 3985] Serotype III 1B1 B28 (W.W.) [1] St.1 [1 1] T1.4.1K [3 3]
T3.2.2K [3 3] T6.2.2C [3 3] TE-93081 [2] Toyama60 [2]
V [1 2] VA [1 8] Vlassel [10 7 7] WP-931108 [3]
WP-931109 strain WP-931109 [4] of Yersinia wautersii WP-931110 [2] WP-931201 strain WP-931201 [212 3 4194] of Yersinia wautersii WP-931202 [1 1 1]
WP-931205 strain WP-931205 [1776] of Yersinia wautersii WS899K [3 3] Wla505 [1 1 1] Wla658 [4 1 1]
Wla872 [2 2 2] Y111 [1] Y117 [1] Y232 [1]
Y237 [1] Y248 [1] Y262 [1] Y266 [3]
Y267 [2] Y36 [2 2] Y385 [3] Y428 [190 4281]
Y706 [2] Y709 [3] Y710 [3] Y711 [1]
Y712 [3] Y713 [1] Y714 [2] Y716 [107 3825]
Y717 [1] Y718 [3] Y720 [3] Y721 [2]
Y722 [103 3737] Y726 [3] Y728 [2] Y729 [3]
Y730 [1] Y731 [3] Y732 [3] Y734 [3]
Y74 [2] Y80 [1] Y938 [1] YLI16.9 [3 3]
YP126 [1 1] YPIII [28 8963 12] YPIII (pIB1) [12 23] YPIII pIB1 [12 23]
YPIII(pIB1) [12 23] YPIII/pIB1 [1] YPIII/pIB1, serotype III [1 3] YPIII[p+] [2 1]
YPIII[p-] [2 1] YPT1 [1 11] Yersinia pseudotuberculosis IA [1 1] Yp 104 [5 5 4]
Yp 22 [5 5 4] Yp 30 [5 5 4] Yp 31 [5 5 4] Yp 43 [5 5 4]
Yp 5 [5 5 4] Yps.F1 [1 235] Yps.R1 [1 81] Yps.R2 [1 105]
Yps146/86 [2] Yps717 [1] Yps727 [1] ryster [1]
serotype 03, YP200 [1 1] serotype O3, YP1134 [1 1] serotype O3, YP307 [1 1] serotype O3, YP346 [1 1]
serotype OIA, PBI [1 1]
type
I [412 8 1633 2]
subtype
O:2b [1 16]
serotype
0:5a [1] 1 [19 3 12342] 10 [1] 11 [1]
1a [4 1 4032] 1b [1] 1c [1] 2a [1]
2b [1] 2c [1] 3 [3 1 13] 4b [2 15]
5a [1] 5b [1] 6 [2 13] 7 [1]
8 [1] 9 [1] I [8 9 2] II [5 5]
III [9 7] IV [2 2] O1:b [1 9] O1b [8 7]
O3 [7 4059] O:1 [7 3 24] O:10 [5 13] O:11 [4 5 36]
O:12 [6 1] O:13 [7 1] O:14 [6 5 21] O:15 [8 21]
O:1a [11 1] O:1b [38 1 4447] O:1c [6 19] O:2b [14]
O:2c [6 15] O:3 [27 7 57] O:4a [12 15] O:4b [14 1 1]
O:5a [14 19] O:5b [15 1 20] O:6 [8 4 22] O:7 [7 16]
O:8 [4 5 14] O:9 [4] Rough [7] Type II; Group B [8 4268]
V [4 4] VI [1 1] n/t [1 1]
serogroup
I [1 1] IA [1 18] IIA [1 22] IVB [1 18]
O3 [1 35] O:1 [8 2 6] O:1a [10 5 8] O:3 [20 7 16]
serovar
01b [2 1] 04a [2 1] O:1 [631 16226] O:10 [246 4214]
O:11 [208 4085] O:15 [360 3985] O:1a [696 16001] O:2 [564 12755]
O:2b [594 12261] O:3 [589 16023] O:4b [172 4127] O:5 [244 4340]
O:5b [214 4164] not available: to be reported later [71 24703] not known [190 4281]
biotype
1 [10 5 8] 2 [20 5 16] O:3 [1 1] O:6 [1 1]
isolate
995 [1 1] H1091/90 [1 15] H450/86 [1 18] H62/87 [1 14]
H713/86 [1 16] H719/86 [1 18] IP32944 [1 1] KUR-1 [1 1]
M444 [1 18] M452 [1 18] M89 [1 1] NZYP4713 [4]
P- [1 1] SA2A106 [1 1]
specimen-voucher
BRD-061 [5 1 4]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.


Comments and questions to info@ncbi.nlm.nih.gov

[Help] [Search] [NLM NIH] [Disclaimer]