Taxonomy browser (Streptomyces albus)

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Taxonomy browser (Streptomyces albus)

Streptomyces albus

Taxonomy ID: 1888 (for references in articles please use NCBI:txid1888)

current name

Streptomyces albus (Rossi Doria 1891) Waksman and Henrici 1943 (Approved Lists 1980) emend. Labeda et al. 2014, nom. approb.¹⁾

type strain of Streptomyces albus: CGMCC :4.164, ATCC :25426, ATCC :3004, IMRU:3004, CBS :410.63, CBS :924.69, BCRC :10802, CCUG :33990, CECT:3077, CIP:104432, DSM :40313, HUT:6613, IFM:1119, IFO :13014, NBRC :13014, IFO :3710, NBRC :3710, IMET:40241, JCM :4450, JCM :4177, KCTC :1082, NCIMB:9558, NRRL :B-1811, NRRL :B-2208, NRRL-ISP:5313, RIA:1206, VKM:Ac-35, ISP:5313
not considered type of Streptomyces albus: NBRC :3418

homotypic synonym:

"Streptotrix alba" (sic) Rossi Doria 1891, effective name²⁾

Streptomyces albus (Rossi Doria 1891) Waksman and Henrici 1943 emend. Labeda et al. 2014 emend. Nouioui et al. 2018, emended name³⁾ in [Nouioui I et al. (2018c)]

includes:

Streptomyces sp. USC057

NCBI BLAST name: high G+C Gram-positive bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:

heterotypic synonym

"Actinomyces almquisti" (sic) Duche 1934, effective name²⁾

heterotypic synonym

"Actinomyces Gibsoni" (sic) Dodge 1935

heterotypic synonym

"Actinomyces Gibsonii" (sic) Erikson 1935

heterotypic synonym

Streptomyces gibsonii (Erikson 1935) Waksman and Henrici 1948

type strain of Streptomyces gibsonii: ATCC :6852, CBS :118.60, CBS :119.60, DSM :43284, HUT:6617, IFO :15415, NBRC :15415, IMET:7023, JCM :5061, NCTC :4575, NRRL :B-1335, BCCM/LMG :19912

homotypic synonym:

"Nocardia gibsonii" (Erikson 1935) Waksman in Waksman and Lechevalier 1953, effective name²⁾

heterotypic synonym

Streptomyces almquistii (Duche 1934) Pridham et al. 1958

type strain of Streptomyces almquistii: CGMCC :4.1685, ATCC :25427, ATCC :618, CBS :925.69, BCRC :12098, DSM :40447, HAMBI:50, HUT:6614, IFO :13015, NBRC :13015, IMET:43380, JCM :4451, KCTC :9672, NRRL :B-1685, NRRL-ISP:5447, RIA:1207, ISP:5447

heterotypic synonym

Streptomyces rangoonensis corrig. (Erikson 1935) Pridham et al. 1958

type strain of Streptomyces rangoonensis: ATCC :25490, ATCC :6860, CBS :918.69, DSM :40452, HUT:6616, IFO :13078, NBRC :13078, IMET:41357, JCM :4510, NRRL :B-12378, NRRL :B-16595, NRRL-ISP:5452, RIA:1270, VKM:Ac:1899, ISP:5452

homotypic synonym:

"Nocardia rangoonensis" Waksman and Henrici 1948, effective name²⁾

heterotypic synonym

Streptomyces griseus subsp. solvifaciens Pridham 1970

type strain of Streptomyces griseus subsp. solvifaciens: CGMCC :4.1845, DSM :40933, NRRL :B-1561, personal::AS 4.1845, JCM :5079

heterotypic synonym

Streptomyces flocculus (Duché 1934) Waksman and Henrici 1948 (Approved Lists 1980)

type strain of Streptomyces flocculus: ATCC :25453, CBS :686.69, BCRC :12068, DSM :40327, HUT:6615, IFO :13041, NBRC :13041, IMET:43522, JCM :4476, NRRL :2960, NRRL :B-2465, NRRL :B-2843, NRRL-ISP:5327, RIA:1233, ISP:5327

homotypic synonym:

"Actinomyces flocculus" Duché 1934, effective name²⁾

heterotypic synonym

Streptomyces rangoon

homotypic synonym:

"Actinomyces rangoon" (sic) Erikson 1935, effective name²⁾

Lineage( full ): cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces

Entrez records
Database name	Subtree links	Direct links	Links from type
Nucleotide	20,190	7,347	439
Protein	103,342	87,309	-
Structure	27	19	-
Genome	1	1	-
Popset	35	35	-
GEO Datasets	13	13	-
PubMed Central	1,195	1,195	-
Gene	39,976	20,342	-
SRA Experiments	164	98	-
Protein Clusters	1,426	1,426	-
Identical Protein Groups	76,539	58,323	-
BioProject	97	90	-
BioSample	155	116	13
Assembly	25	15	2
PubChem BioAssay	39	39	-
Taxonomy	7	1	-

Notes:

1) 'Nom. approb.' (= nomen approbatum, = approved name) refers to a name which is included in the Approved Lists of Bacterial Names.
2) This taxonomic name has been effectively published but not validly published under the rules of the International Code of Nomenclature of Prokaryotes (Bacteriological Code).
3) emend. (emendavit): Used when the alteration of the diagnostic characters or of the circumscription of a taxon modifies the nature of the taxon.

Comments and References:

Nouioui I et al. (2018c), doi: 10.3389/fmicb.2018.02007, PubMed: abstract

Nouioui, I., Carro, L., García-López, M., Meier-Kolthoff, J.P., Woyke, T., Kyrpides, N.C., Pukall, R., Klenk, H.-P., Goodfellow, M., and Göker M. "Genome-based taxonomic classification of the phylum Actinobacteria." Front. Microbiol. (2018) 9:2007.

Erikson D (1935)

Erikson, D. "The pathogenic aerobic organisms of the actinomyces group." Medical Research Council (Great Britain) Special Report series (1935) 203:5-61. [No PubMed record available.]

Kilian M (2001)

Kilian, M. "Recommended conservation of the names Streptococcus sanguis, Streptococcus rattus, Streptococcus cricetus, and seven other names included in the Approved Lists of Bacterial Names. Request for an Opinion." Int. J. Syst. Evol. Microbiol. (2001) 51:723-724.

Rong X et al. (2009)

Rong, X., Guo, Y., and Huang, Y. "Proposal to reclassify the Streptomyces albidoflavus clade on the basis of multilocus sequence analysis and DNA-DNA hybridization, and taxonomic elucidation of Streptomyces griseus subsp. solvifaciens." Syst. Appl. Microbiol. (2009) 32(5):314-322.

Pridham TG (1970)

Pridham, T.G. "New names and new combinations in the order Actinomycetales Buchanan 1917." U.S. Dept. Agric. Tech. Bull. (1970) 1424:1-55. [No PubMed record available.]

Labeda DP et al. (2014)

Labeda, D.P., Doroghazi, J.R., Ju, K.S., and Metcalf, W.W. "Taxonomic evaluation of Streptomyces albus and related species using multilocus sequence analysis and proposals to emend the description of Streptomyces albus and describe Streptomyces pathocidini sp. nov." Int. J. Syst. Evol. Microbiol. (2014) 64(3):894-900.

Skerman VBD et al. (1980)

Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. (editors). "Approved lists of bacterial names." Int. J. Syst. Bacteriol. (1980) 30:225-420. [No PubMed record available.]

Trüper HG & De'clari L (1997) (reference relating to orthographic revision)

Trüper, H.G., and De'clari, L. "Taxonomic note: Necessary correction of specific epithets formed as substantives (nouns) 'in apposition'." Int. J. Syst. Bacteriol. (1997) 47(3):908-909. [No PubMed record available.]

Shirling EB & Gottlieb D (1969)

Shirling, E.B., and Gottlieb, D. "Cooperative description of type cultures of Streptomyces. IV. Species descriptions from the second, third and fourth studies." Int. J. Syst. Bacteriol. (1969) 19:391-512. [No PubMed record available.]

Waksman SA & Henrici AT (1948b)

Waksman, S.A., and Henrici, A.T. "Family III. Streptomycetaceae Waksman and Henrici." IN: Breed, Murray, and Hitchens (Eds.), Bergey's Manual of Determinative Bacteriology, 6th Ed. (1948). The Williams and Wilkins Co., Balitmore. pp. 929-980. [No PubMed record available.]

Truper HG (2008)

Truper, H.G.. "Against conservation of specific epithets formed wrongly as nominative nouns in apposition." Int. J. Syst. Evol. Microbiol. (2008) 58:1508-1510.

Lapage SP et al. (1992) (reference with type strain information)

Lapage, S.P., Sneath, P.H.A., Lessel, E.F., Skerman, V.B.D., Seeliger, H.P.R., and Clark, W.A. "International Code of Nomenclature of Bacteria (1990 revision)." American Society for Microbiology, Washington, D.C. (1992). [No PubMed record available.]

List of Changes in Taxonomic Opinion No. 11 (2010), other link:https://ijs.microbiologyresearch.org/content/journal/ijsem/10.1099/ijs.0.021212-0

Euzeby, J.P. "Notification of changes in taxonomic opinion previously published outside the IJSEM." Int. J. Syst. Evol. Microbiol. (2010) 60:5-6.

Pridham RG et al. (1958), other link:https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/pmc/articles/PMC1057356/

Pridham, R.G., Hesseltine, C.W., and Benedict, R.G. "A guide for the classification of streptomycetes according to selected groups: placement of strains in morphological sections." Appl. Microbiol. (1958) 6(1):52-79. [No abstract available.]

Kilian M (1998)

Kilian, M. "Necessary changes of bacterial names?" ASM News (1998) 64:670. [No PubMed record available.]

Waksman SA & Henrici AT (1943)

Waksman, S.A., and Henrici, A.T. "The nomenclature and classification of the actinomycetes." J. Bacteriol. (1943) 46(4):337-341. [No abstract available.]

Streptomyces albidoflavus group

According to Rong et al. (2009), the members of this group as well as Streptomyces globisporus subsp. caucasicus and Streptomyces griseus subsp. solvifaciens (syn. Streptomyces alba) are synonymous and should be classified as Streptomyces albioflavus.

External Information Resources (NCBI LinkOut)

LinkOut	Subject	LinkOut Provider
Streptomyces albus	meta-databases	BacDive
2 records from this provider	organism-specific	BioCyc
6 records from this provider	organism-specific	Genomes On Line Database
Show Biotic Interactions	taxonomy/phylogenetic	Global Biotic Interactions
Streptomyces albus	culture/stock collections	Global Catalogue of Microorganisms
77 records from provider	organism-specific	Integrated Microbial Genomes

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.

Comments and questions to info@ncbi.nlm.nih.gov