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Taxonomy browser (Pyrococcus horikoshii OT3)

Pyrococcus horikoshii OT3

Taxonomy ID: 70601 (for references in articles please use NCBI:txid70601)
current name
Pyrococcus horikoshii OT3
equivalent:
Pyrococcus horikoshii OT-3
Pyrococcus horikoshii str. OT3
NCBI BLAST name: euryarchaeotes
Rank: strain
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Other names:
heterotypic synonym
Pyrococcus shinkaii OT3
equivalent:
Pyrococcus sp. OT3
Lineage( full )
cellular organisms; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus horikoshii
   Entrez records   
Database name Direct links Links from type
Nucleotide 81 9
Protein 4,035 -
Structure 451 -
Genome 1 -
Popset 3 -
GEO Datasets 4 -
PubMed Central 53 -
Gene 2,174 -
SRA Experiments 1 -
Identical Protein Groups 3,059 -
BioProject 3 -
BioSample 2 2
Assembly 1 1
PubChem BioAssay 4 -
Taxonomy 1 -

Comments and References:

genome sequence
Determination of the DNA genome sequence of this strain has been or is being determined either in whole or in part.
Kawarabayasi Y et al. (1998a)
Kawarabayasi, Y., Sawada, M., Horikawa, H., Haikawa, Y., Hino, Y., Yamamoto, S., Sekine, M., Baba, S., Kosugi, H., Hosoyama, A., Nagai, Y., Sakai, M., Ogura, K., Otsuka, R., Nakazawa, H., Takamiya, M., Ohfuku, Y., Funahashi, T., Tanaka, T., Kudoh, Y., Yamazaki, J., Kushida, N., Oguchi, A., Aoki, K., and Kikuchi, H. "Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3." DNA Res. (1998) 5:55-76.
Kawarabayasi Y et al. (1998b)
Kawarabayasi, Y., Sawada, M., Horikawa, H., Haikawa, Y., Hino, Y., Yamamoto, S., Sekine, M., Baba, S., Kosugi, H., Hosoyama, A., Nagai, Y., Sakai, M., Ogura, K., Otsuka, R., Nakazawa, H., Takamiya, M., Ohfuku, Y., Funahashi, T., Tanaka, T., Kudoh, Y., Yamazaki, J., Kushida, N., Oguchi, A., Aoki, K., and Kikuchi, H. "Complete sequence and gene organization of the genome of a hyper-thermophilic archaebacterium, Pyrococcus horikoshii OT3 (supplement)." DNA Res. (1998) 5:147-155.

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Pyrococcus horikoshii OT3 organism-specific BioCyc
GOLD: Go0000775 organism-specific Genomes On Line Database
2923400019: Pyrococcus horikoshii OT3 organism-specific Integrated Microbial Genomes
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

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Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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