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Taxonomy browser (Nitratidesulfovibrio vulgaris)

Nitratidesulfovibrio vulgaris

Taxonomy ID: 881 (for references in articles please use NCBI:txid881)
current name
Nitratidesulfovibrio vulgaris (Postgate and Campbell 1966) Waite et al. 2020 in [Waite DW et al. (2020b)]
basionym:
Desulfovibrio vulgaris Postgate and Campbell 1966 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
type strain of Desulfovibrio vulgaris: ATCC:29579, CCUG:34227, CIP:107040, DSM:644, BCCM/LMG:7563, NCAIM B.01489, VKM:B-1760, personal::Hildenborough, NCIMB:8303
includes:
Desulfovibrio vulgaris subsp. vulgaris Postgate and Campbell 1966 (Approved Lists 1980) in [Skerman VBD et al. (1980)]
NCBI BLAST name: bacteria
Rank: species
Genetic code: Translation table 11 (Bacterial, Archaeal and Plant Plastid)
Lineage( full )
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfovibrionia; Desulfovibrionales; Desulfovibrionaceae; Nitratidesulfovibrio
   Entrez records   
Database name Subtree links Direct links Links from type
Nucleotide 2,269 1,734 491
Protein 22,930 11,276 -
Structure 214 58 -
Genome 1 1 -
Popset 11 11 -
Conserved Domains 3 3 -
GEO Datasets 418 52 -
PubMed Central 1,821 1,821 -
Gene 13,486 1 -
SRA Experiments 500 62 -
Protein Clusters 3,530 3,530 -
Identical Protein Groups 9,652 7,672 -
BioProject 80 25 -
BioSample 561 77 468
Assembly 8 4 2
PubChem BioAssay 5 4 -
Taxonomy 5 1 -

Comments and References:

Waite DW et al. (2020b), PubMed: abstract
Waite, D.W., Chuvochina, M., Pelikan, C., Parks, D.H., Yilmaz, P., Wagner, M., Loy, A., Naganuma, T., Nakai, R., Whitman, W.B., Hahn, M.W., Kuever, J., and Hugenholtz, P. "Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities." Int. J. Syst. Evol. Microbiol. (2020) 70(11):5972-6016.
Skerman VBD et al. (1980)
Skerman, V.B.D., McGowan, V., and Sneath, P.H.A. "Approved Lists of Bacterial Names." Intl. J. Syst. Bacteriol. (1980) 30(1):225-420.
image:Desulfovibrio vulgaris
Postgate JR & Campbell LL (1966)
Postgate, J.R., and Campbell, L.L. "Classification of Desulfovibrio species, the nonsporulating sulfate-reducing bacteria." Bacteriol. Rev. (1966) 30:732-738. [No abstract available.]

External Information Resources (NCBI LinkOut)

LinkOut Subject LinkOut Provider
Desulfovibrio vulgaris meta-databases BacDive
6 records from this provider organism-specific Genomes On Line Database
2 records from this provider culture/stock collections Global Catalogue of Microorganisms
OMA taxonomy/phylogenetic OMA Browser: Orthologous MAtrix
Desulfovibrio vulgaris Postgate & Campbell, 1966 taxonomy/phylogenetic Ocean Biogeographic Information System
Desulfovibrio vulgaris Postgate & Campbell, 1966 taxonomy/phylogenetic World Register of Marine Species
Notes:
Groups interested in participating in the LinkOut program should visit the LinkOut home page.
A list of our current non-bibliographic LinkOut providers can be found here.

Information from sequence entries

Organism modifiers

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strain
(Hildenborough) strain Hildenborough [3 478 73 1 5513 483 1 4603 424 25] of Nitratidesulfovibrio vulgaris str. Hildenborough A1 [5 3 1 2] ATCC 29579 strain ATCC 29579 [4 1 1 1] of Nitratidesulfovibrio vulgaris str. Hildenborough CINBIN-C6 [1]
CS14 [1 1] DSM 1744 [1 1] DSM 644 [8 1 4] DePue [5 9]
GK [1] GSK1124 [1 1] HAQ-4 [1 1] Hildenborough strain Hildenborough [3 478 73 1 5513 483 1 4603 424 25] of Nitratidesulfovibrio vulgaris str. Hildenborough
Hildenborough NCIMB 8303 strain Hildenborough NCIMB 8303 [1 2] of Nitratidesulfovibrio vulgaris str. Hildenborough I5 [1] L2 [1 1 27 7 3300] Lac3 [1]
M10_1 [1] M1_1 [1] M1_2 [1] M3_1 [1]
M3_2 [1] M4_3 [1] M5_1 [1] M5_2 [1]
M6_1 [1] M6_2 [1] M6_3 [1] M7_1 [1]
M7_2 [1] M7_3 [1] M8 [1] M9_1 [1]
M9_2 [1] M9_3 [1] MKF [1] MSC53 [1 1]
Marburg [1 1] Miazaki F strain Miyazaki F [2 2 36 426 1 7] of Nitratidesulfovibrio vulgaris str. 'Miyazaki F' Miyazaki strain Miyazaki F [2 2 36 426 1 7] of Nitratidesulfovibrio vulgaris str. 'Miyazaki F' Miyazaki F strain Miyazaki F [2 2 36 426 1 7] of Nitratidesulfovibrio vulgaris str. 'Miyazaki F'
MiyazakiF strain Miyazaki F [2 2 36 426 1 7] of Nitratidesulfovibrio vulgaris str. 'Miyazaki F' NFB [1] NR-074446 [1] Norway [1 2]
PTUKS [1] PhM22 [1] PhM25 [1 1] PhM28 [1 1]
PhM29 [1 1] PhM31 [1 1] RL [1] SspEND30a [1 1]
SspEND32b [1 1] TERI GP2 [1 1] TERIMIC1512 [1] UIS0190 [1]
UR1 [1] UTM FZZ24 [1] UTM FZZ29 [1] UlEPI4 [1 1]
VNs57 [1 1] Z11_1 [1] Z12_1 [1] Z8_2 [1]
Z9_2 [1] Z9_3 [1]
isolate
19 [1 1] 8 [1 1 1] DGGE gel band A [1 1 1] ERR1190736-bin.9 [877]
ERR4968602_bin.5_MetaWRAP_v1.1_MAG [425] F [5 13] NCIMB 8303 [1 7] PETROMIC B06 [1]
culture-collection
DSM:644 [6 2]


Disclaimer: The NCBI taxonomy database is not an authoritative source for nomenclature or classification - please consult the relevant scientific literature for the most reliable information.

Reference: How to cite this resource - Schoch CL, et al. NCBI Taxonomy: a comprehensive update on curation, resources and tools. Database (Oxford). 2020: baaa062. PubMed: 32761142 PMC: PMC7408187.


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