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Trace Archive Reports

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Incoming Data on 11-17-2006

This report provides cumulative trace accumulation (trace counts, total bases and Q20 bases). There are some depositions that will show 0 q20 bases. This is likely due to the center submitting ABI files and not providing quality calls separately.

The statistics below represents only data loaded during the last week. The accumulation is indicated with the '+' sign. To get full report, which includes organisms not received additions during the week, press the "Save" button at the top of the page.

Species Code Center Trace Type Code Number
of Traces
Number
of Base Pairs
Number of Base Pairs
with Qualities > 20
%
ACYRTHOSIPHON PISUM BCM WGS 2,780,233
+127,711
2,702,499,217
+146,221,112
2,243,185,171
+115,851,033
83.00
ANOLIS CAROLINENSIS WIBR WGS 20,825,776
+244,224
18,301,337,603
+208,643,482
13,536,331,213
+147,086,450
73.96
ANOPHELES GAMBIAE WUGSC WGS 1,165,178
+822,931
893,914,292
+625,831,017
710,909,945
+502,015,471
79.53
AOTUS NANCYMAAE NISC SHOTGUN 567,386
+48,299
592,394,156
+49,767,180
395,742,483
+33,602,083
66.80
ATELERIX ALBIVENTRIS NISC SHOTGUN 891,005
+2,180
905,992,273
+2,273,454
607,067,502
+1,561,847
67.01
BURKHOLDERIA PHYMATUM STM815 JGI WGS 114,817
+114,817
96,764,645
+96,764,645
81,967,294
+81,967,294
84.71
BURKHOLDERIA PHYTOFIRMANS PSJN JGI WGS 108,483
+108,483
91,721,202
+91,721,202
79,005,260
+79,005,260
86.14
CALLICEBUS MOLOCH NISC SHOTGUN 563,090
+3,248
591,003,528
+3,394,257
404,025,531
+2,263,229
68.36
CANIS FAMILIARIS WIBR OTHER 7,422
+24
6,542,432
+21,751
2,509,754
+11,529
38.36
CANIS FAMILIARIS WIBR PCR 4,198
+116
3,627,038
+105,857
1,146,591
+35,605
31.61
CANIS FAMILIARIS WIBR PRIMERWALK 2,162
+50
1,801,325
+40,372
877,166
+14,415
48.70
CANIS FAMILIARIS WIBR SHOTGUN 1,843,262
+9,077
1,672,945,645
+7,976,202
1,195,623,893
+6,155,149
71.47
CANIS FAMILIARIS WIBR TRANSPOSON 243,949
+2,916
212,175,300
+2,577,656
156,025,024
+1,954,690
73.54
CAVIA PORCELLUS NISC SHOTGUN 494,425
+2,111
510,955,059
+2,182,648
348,982,523
+1,410,309
68.30
CERCOPITHECUS AETHIOPS NISC SHOTGUN 158,882
+2,037
150,748,615
+2,099,528
106,713,978
+1,435,649
70.79
CHLOROFLEXUS AGGREGANS DSM 9485 JGI 454 683,597
+683,597
73,522,067
+73,522,067
67,649,928
+67,649,928
92.01
CHLOROFLEXUS AGGREGANS DSM 9485 JGI WGS 60,393
+60,393
60,331,141
+60,331,141
37,645,085
+37,645,085
62.40
COLOBUS GUEREZA NISC SHOTGUN 357,279
+51,569
369,285,218
+53,242,452
251,052,945
+35,766,535
67.98
COMAMONAS TESTOSTERONI KF-1 JGI 454 1,031,680
+1,031,680
105,596,394
+105,596,394
94,960,695
+94,960,695
89.93
COMAMONAS TESTOSTERONI KF-1 JGI WGS 91,036
+91,036
76,791,215
+76,791,215
65,322,823
+65,322,823
85.07
COXIELLA BURNETII 'MSU GOAT Q177' TIGR_JCVIJTC PRIMERWALK 84
+84
84,315
+84,315
37,568
+37,568
44.56
COXIELLA BURNETII 'MSU GOAT Q177' TIGR_JCVIJTC WGS 4,151
+4,151
4,095,075
+4,095,075
3,133,634
+3,133,634
76.52
DIPODOMYS ORDII BCM WGS 167,318
+44,380
158,209,512
+40,383,317
130,732,895
+33,669,092
82.63
ECHINOPS TELFAIRI NISC SHOTGUN 344,603
+34,841
355,488,209
+36,170,074
247,918,126
+24,913,799
69.74
EQUUS CABALLUS BCCAGSC CLONEEND 4,765
+4,765
5,897,704
+5,897,704
3,962,569
+3,962,569
67.19
FERVIDOBACTERIUM NODOSUM RT17-B1 JGI WGS 25,764
+25,764
25,902,030
+25,902,030
17,834,764
+17,834,764
68.85
GALLUS GALLUS WUGSC PCR 3,740
+31
2,850,376
+28,968
1,426,495
+7,180
50.05
GALLUS GALLUS WUGSC PRIMERWALK 122,591
+185
98,559,042
+155,696
66,153,082
+84,565
67.12
GALLUS GALLUS WUGSC SHOTGUN 2,477,262
+31,293
2,068,964,657
+23,578,911
1,575,439,617
+18,068,337
76.15
HOMO SAPIENS ABC WGS 14,203,278
+134,687
10,509,403,755
+101,562,294
7,549,534,210
+81,107,307
71.84
HOMO SAPIENS BCCAGSC RT-PCR 37,671
+6,200
40,516,196
+6,131,633
31,361,595
+4,850,700
77.41
HOMO SAPIENS WUGSC PCR 617,695
+205,910
400,059,896
+137,052,393
213,944,070
+67,170,404
53.48
IXODES SCAPULARIS WIBR OTHER 48
+10
40,063
+7,700
17,222
+1,702
42.99
IXODES SCAPULARIS WIBR PRIMERWALK 16
+8
12,571
+5,626
2,742
+1,046
21.81
MACACA MULATTA BCM SHOTGUN 2,309,036
+26,278
2,210,258,099
+23,396,568
1,696,372,294
+19,426,563
76.75
MACROPUS EUGENII NISC SHOTGUN 178,135
+596
170,085,699
+597,322
129,147,818
+382,919
75.93
MAGNAPORTHE GRISEA WIBR TRANSPOSON 287,627
+800
250,644,181
+684,930
172,262,100
+525,552
68.73
MICROCEBUS MURINUS NISC SHOTGUN 513,775
+2,617
526,735,084
+2,702,219
362,607,413
+1,820,579
68.84
MICROCEBUS MURINUS WIBR WGS 10,384
+2,704
9,153,160
+2,252,399
6,931,062
+1,651,919
75.72
MUNTIACUS REEVESI NISC SHOTGUN 108,041
+2,750
112,262,238
+2,892,579
77,423,594
+1,941,606
68.97
MUS MUSCULUS BCCAGSC RT-PCR 14,070
+4,473
15,603,921
+5,024,372
12,400,260
+3,945,785
79.47
MUS MUSCULUS WUGSC PCR 42,222
+31
29,388,959
+27,587
16,094,468
+12,274
54.76
MUS MUSCULUS WUGSC PRIMERWALK 58,572
+3
47,637,734
+2,762
31,516,881
+2,227
66.16
MUS MUSCULUS WUGSC SHOTGUN 18,933,728
+16,973
15,001,423,288
+12,909,143
11,322,526,562
+9,804,237
75.48
MYCOSPHAERELLA FIJIENSIS CIRAD86 JGI WGS 861,500
+6,048
833,780,681
+5,387,325
585,646,593
+3,660,294
70.24
NASONIA VITRIPENNIS BCM WGS 3,230,210
+637
2,991,634,760
+571,676
2,446,368,085
+474,467
81.77
OCHOTONA PRINCEPS WIBR WGS 3,971,300
+1,090,071
3,408,612,234
+949,393,187
2,524,162,402
+692,034,222
74.05
ORNITHORHYNCHUS ANATINUS NISC SHOTGUN 563,175
+15,068
549,389,124
+15,320,025
380,866,845
+10,322,820
69.33
PAN TROGLODYTES WUGSC PCR 10,021
+45
7,591,105
+40,929
4,087,941
+15,870
53.85
PAN TROGLODYTES WUGSC PRIMERWALK 67,654
+712
56,730,150
+582,051
35,438,776
+317,513
62.47
PAN TROGLODYTES WUGSC SHOTGUN 7,536,861
+63,090
6,248,109,381
+46,711,725
4,666,499,488
+35,511,442
74.69
PANTOEA STEWARTII BCM WGS 141,115
+1
137,485,229
+724
114,838,692
+240
83.53
PERKINSUS MARINUS TIGR_JCVIJTC WGS 542,279
+542,279
563,777,296
+563,777,296
443,354,217
+443,354,217
78.64
PSEUDOMONAS MENDOCINA YMP JGI WGS 91,578
+91,578
80,633,281
+80,633,281
61,581,340
+61,581,340
76.37
RHINOLOPHUS FERRUMEQUINUM NISC SHOTGUN 837,430
+1,994
850,104,840
+2,032,408
597,402,125
+1,341,016
70.27
ROSEIFLEXUS CASTENHOLZII DSM 13941 JGI WGS 60,674
+60,674
58,834,622
+58,834,622
40,579,734
+40,579,734
68.97
SAIMIRI BOLIVIENSIS BOLIVIENSIS NISC SHOTGUN 121,585
+2,758
123,668,695
+2,807,413
86,482,813
+1,821,499
69.93
SELAGINELLA MOELLENDORFFII JGI WGS 2,685,165
+7,680
2,703,102,743
+6,591,546
1,843,032,707
+4,905,485
68.18
SERRATIA PROTEAMACULANS 568 JGI WGS 67,844
+67,844
65,004,941
+65,004,941
47,608,773
+47,608,773
73.24
SHEWANELLA WOODYI ATCC 51908 JGI WGS 73,247
+73,247
71,911,959
+71,911,959
51,387,764
+51,387,764
71.46
SOREX ARANEUS NISC SHOTGUN 711,773
+9,826
725,020,554
+10,207,190
501,142,919
+6,443,957
69.12
SORGHUM BICOLOR JGI WGS 10,371,954
+389,870
10,138,386,794
+401,912,048
7,005,300,352
+252,908,022
69.10
TURSIOPS TRUNCATUS BCM WGS 10,028,034
+493,582
9,393,927,983
+443,216,211
7,930,368,708
+374,889,810
84.42
YERSINIA PSEUDOTUBERCULOSIS IP 31758 TIGR_JCVIJTC PRIMERWALK 1,399
+47
1,412,901
+47,534
957,365
+33,461
67.76
YERSINIA PSEUDOTUBERCULOSIS IP 31758 TIGR_JCVIJTC WGS 56,492
+6
57,199,150
+5,945
48,825,043
+3,771
85.36
ZEA MAYS WUGSC CLONEEND 456,342
+41,469
382,349,802
+33,325,077
248,250,856
+24,224,414
64.93
ZEA MAYS WUGSC PCR 17,026
+292
13,398,635
+246,494
6,782,633
+99,832
50.62
ZEA MAYS WUGSC PRIMERWALK 254,956
+1,859
221,273,991
+1,526,498
133,736,838
+852,675
60.44
ZEA MAYS WUGSC SHOTGUN 7,025,941
+137,125
5,689,004,857
+105,578,216
4,282,424,173
+80,549,439
75.28