| Name |
Description |
|
[see RFC]
ACCESSION
|
Genbank/EMBL/DDBJ accession number |
|
[see RFC]
AMPLIFICATION_FORWARD
|
The forward amplification primer sequence |
|
[see RFC]
AMPLIFICATION_REVERSE
|
The reverse amplification primer sequence |
|
[see RFC]
ANONYMIZED_ID
|
Anonymous ID for an individual |
|
[see RFC]
BASES_20
|
Number of quality scores which exceed 20 |
|
[see RFC]
BASES_40
|
Number of quality scores which exceed 40 |
|
[see RFC]
BASES_60
|
Number of quality scores which exceed 60 |
|
[see RFC]
CENTER_NAME
|
Name of the sequencing center |
|
[see RFC]
CENTER_PROJECT
|
Center defined project name |
|
[see RFC]
CHEMISTRY
|
Description of the chemistry used in the sequencing reaction |
|
[see RFC]
CHEMISTRY_TYPE
|
Type of chemistry used in the sequencing reaction |
|
[see RFC]
CHROMOSOME
|
Chromosome to which the trace is assigned |
|
[see RFC]
CLIP_QUALITY_LEFT
|
Left clip of the read, in base pairs, based on quality analysis |
|
[see RFC]
CLIP_QUALITY_RIGHT
|
Right clip of the read, in base pairs, based on quality analysis |
|
[see RFC]
CLIP_VECTOR_LEFT
|
Left clip of the read, in base pairs, based on vector sequence |
|
[see RFC]
CLIP_VECTOR_RIGHT
|
Right clip of the read, in base pairs, based on vector sequence |
|
[see RFC]
CLONE_ID
|
The name of the clone from which the trace was derived |
|
[see RFC]
COLLECTION_DATE
|
The full date, in "Mar 2 2006 12:00AM" format, on which an environmental sample was collected |
|
[see RFC]
CVECTOR_ACCESSION
|
Repository ( GenBank/EMBL/DDBJ) accession identifier for the cloning vector |
|
[see RFC]
CVECTOR_CODE
|
Center defined code for the cloning vector |
|
[see RFC]
ENVIRONMENT_TYPE
|
Type of environment from which an environmental sample was collected |
|
[see RFC]
FEATURE_ID_FILE_NAME
|
Reference to a common FEATURE_ID_FILE |
|
[see RFC]
GENE_NAME
|
Gene name or some other common identifier |
|
[see RFC]
HOST_ID
|
Unique identifier for the specific host from which an environmental sample was taken |
|
[see RFC]
HOST_LOCATION
|
Specific location on the host from which an environmental sample was collected |
|
[see RFC]
HOST_SPECIES
|
The host from which an environmental sample was obtained |
|
[see RFC]
INDIVIDUAL_ID
|
Publicly available identifier to denote a specific individual or sample from which a trace was derived |
|
[see RFC]
INSERT_FLANK_LEFT
|
Left flanking sequence at the cloning junction |
|
[see RFC]
INSERT_FLANK_RIGHT
|
Right flanking sequence at the cloning junction |
|
[see RFC]
INSERT_SIZE
|
Expected size of the insert (referred to by the value in the TEMPLATE_ID field) in base pairs |
|
[see RFC]
INSERT_STDEV
|
Approximate standard deviation of value in INSERT_SIZE field |
|
[see RFC]
LIBRARY_ID
|
The source of the clone identified in the CLONE_ID field |
|
[see RFC]
LOAD_DATE
|
Date of load this data |
|
[see RFC]
NCBI_PROJECT_ID
|
Project ID generated by the Genome Project database at NCBI/NLM/NIH |
|
[see RFC]
ORGANISM_NAME
|
Description of species for BARCODE project from which trace is derived |
|
[see RFC]
PICK_GROUP_ID
|
Id to group traces picked at the same time |
|
[see RFC]
PLATE_ID
|
Submitter defined plate id |
|
[see RFC]
POPULATION_ID
|
Center provided id to designate a population from which a trace (or group of traces) was derived |
|
[see RFC]
PREP_GROUP_ID
|
Id to group traces prepared at the same time |
|
[see RFC]
PRIMER
|
The primer sequence (used in the sequencing reaction) |
|
[see RFC]
PRIMER_CODE
|
Identifier for the sequencing primer used |
|
[see RFC]
PROGRAM_ID
|
The program used to create the trace file |
|
[see RFC]
PROJECT_NAME
|
Term by which to group traces based on a common project. |
|
[see RFC]
REFERENCE_ACCESSION
|
Reference accession (use accession and version to specify a particular instance of a sequence) used as the basis for a re-sequencing project. In case of Comparative strategy show the basis for primers design |
|
[see RFC]
RUN_DATE
|
Date the sequencing reaction was run |
|
[see RFC]
RUN_GROUP_ID
|
Id to group traces run on the same machine |
|
[see RFC]
RUN_LANE
|
Lane or capillary of the trace |
|
[see RFC]
RUN_MACHINE_ID
|
ID of the specific sequencing machine on which a trace was obtained |
|
[see RFC]
RUN_MACHINE_TYPE
|
Type or model of machine on which a trace was obtained |
|
[see RFC]
SEQ_LIB_ID
|
Center specified M13/PUC library that is actually sequenced |
|
[see RFC]
SOURCE_TYPE
|
Source of the DNA |
|
[see RFC]
SPECIES_CODE
|
Description of species from which trace is derived |
|
[see RFC]
STRAIN
|
Strain from which a trace is derived |
|
[see RFC]
STRATEGY
|
Experimental STRATEGY |
|
[see RFC]
SUBMISSION_TYPE
|
Type of submission: new, update... |
|
[see RFC]
SVECTOR_ACCESSION
|
GenBank/EMBL/DDBJ accession of the sequencing vector |
|
[see RFC]
SVECTOR_CODE
|
Center defined code for the sequencing vector |
|
[see RFC]
TEMPLATE_ID
|
Submitter defined identifier for the sequencing template |
|
[see RFC]
TI
|
Trace internal Identifier |
|
[see RFC]
TRACE_END
|
Defines the end of the template contained in the read |
|
[see RFC]
TRACE_FORMAT
|
Format of the trace file (scf, abi...) |
|
[see RFC]
TRACE_NAME
|
Center defined trace identifier |
|
[see RFC]
TRACE_TYPE_CODE
|
Sequencing strategy by which the trace was obtained |
|
[see RFC]
TRANSPOSON_ACC
|
GenBank/EMBL/DDBJ accession for transposon used in generating sequencing template |
|
[see RFC]
TRANSPOSON_CODE
|
Center defined code for transposon used in generating sequencing template |
