NCQP00000000.1 Pyrodictium delaneyi
- Master
# of Contigs: 9 # of Proteins: 2,019 Total length: 2,042,801 bp BioProject: PRJNA382239 BioSample: SAMN06702682 Keywords: WGS Annotation: Contigs Organism: Pyrodictium delaneyi – show lineagehide lineage Biosource: /collection_date = 15-May-2004/country = Pacific Ocean: Juan de Fuca Ridge/isolation_source = hydrothermal vent/lat_lon = 47.9501 N 129.097 W/mol_type = genomic/strain = HulkWGS: NCQP01000001:NCQP01000009 Reference: The draft genome of the hyperthermophilic archaeon 'Pyrodictium delaneyi strain Hulk', an iron and nitrate reducer, reveals the capacity for sulfate reduction : Unpublished – Demey,L.M., Miller,C., Manzella,M., Reguera,G., Kashefi,K.Submission: Submitted (09-MAY-2017) Microbiology and Molecular Genetics, Michigan State University, 567 Wilson Rd., East Lansing, MI 48824, USA – Demey,L.M., Miller,C., Manzella,M., Reguera,G., Kashefi,K.The Pyrodictium delaneyi whole genome shotgun (WGS) project has the project accession NCQP00000000. This version of the project (01) has the accession number NCQP01000000, and consists of sequences NCQP01000001-NCQP01000009.
Bacteria and source DNA available from Kazem Kashefi, 567 Wilson Rd., East Lansing, MI 48824.
Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/genome/annotation_prok/
##Genome-Annotation-Data-START## Annotation Provider : NCBI Annotation Date : 05/10/2017 11:58:39 Annotation Pipeline : NCBI Prokaryotic Genome Annotation Pipeline Annotation Method : Best-placed reference protein set; GeneMarkS+ Annotation Software revision : 4.1 Features Annotated : Gene; CDS; rRNA; tRNA; ncRNA; repeat_region Genes (total) : 2,089 CDS (total) : 2,036 Genes (coding) : 2,019 CDS (coding) : 2,019 Genes (RNA) : 53 rRNAs : 2, 1, 1 (5S, 16S, 23S) complete rRNAs : 2, 1, 1 (5S, 16S, 23S) partial rRNAs : tRNAs : 47 ncRNAs : 2 Pseudo Genes (total) : 17 Pseudo Genes (ambiguous residues) : 0 of 17 Pseudo Genes (frameshifted) : 8 of 17 Pseudo Genes (incomplete) : 10 of 17 Pseudo Genes (internal stop) : 1 of 17 Pseudo Genes (multiple problems) : 2 of 17 CRISPR Arrays : 7 ##Genome-Annotation-Data-END## ##Genome-Assembly-Data-START## Assembly Method : Velvet v. 2-6-2015 Assembly Name : Pdsh-A1.0 Genome Representation : Full Expected Final Version : Yes Genome Coverage : 300.0x Sequencing Technology : Illumina MiSeq ##Genome-Assembly-Data-END## - Contigs
- Proteins
- Download
Contigs:
GenBank:NCQP01.1.gbff.gz 1.3 MbFASTA:NCQP01.1.fsa_nt.gz 618.6 kbASN.1:NCQP01.1.bbs.gz 1.1 MbProteins:
GenPept:NCQP01.1.gnp.gz 660.3 kbFASTA:NCQP01.1.fsa_aa.gz 360.2 kb