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PubMed Protein Genome Structure PopSet Taxonomy OMIM

Gossypium hirsutum: UniGene Build #14

Lineage: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; eudicotyledons; core eudicotyledons; rosids; eurosids II; Malvales; Malvaceae; Malvoideae; Gossypium; Gossypium hirsutum

Sequences Included in UniGene
Known genes are from GenBank 28 Apr 2013
ESTs are from dbEST through 28 Apr 2013

1,075 mRNAs
0 Models
166 HTC
32,969 EST, 3'reads
18,576 EST, 5'reads
201,718 EST, other/unknown

254,504 total sequences in clusters

Build Method: Transcript Based

Alignments between all transcript sequences are used to generate clusters of sequences originating from the same gene.

Final Number of Clusters (sets)

21,406 sets total
828 sets contain at least one mRNA
158 sets contain at least one HTC sequence
21,357 sets contain at least one EST
781 sets contain both mRNAs and ESTs

Histogram of cluster sizes for UniGene Ghi build 14
Cluster size Number of clusters

1025-2048 3
513-1024 13
257-512 35
129-256 106
65-128 340
33-64 914
17-32 1950
9-16 3583
5-8 5056
3-4 5946
2 1326
1 2134

UniGene Links
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Other Links
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NIH cDNA Projects

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