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mAcoDim1_REL_1905

Organism name:
Acomys dimidiatus (rodents)
BioSample:
SAMEA8478151
BioProject:
PRJEB44012
Submitter:
WELLCOME TRUST SANGER INSTITUTE
Date:
2021/07/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_907164435.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAJQZA01
Genome coverage:
80x

IDs: 10452981 [UID] 27758248 [GenBank]

See Genome Information for Acomys dimidiatus

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,302,401,611
Total ungapped length2,258,756,971
Gaps between scaffolds0
Number of scaffolds18,302
Scaffold N50124,365,287
Scaffold L508
Number of contigs127,573
Contig N5033,040
Contig L5020,276
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)18,302

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_907164434.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OU015374.1n/an/a0
Chromosome 2OU015375.1n/an/a0
Chromosome 3OU015376.1n/an/a0
Chromosome 4OU015377.1n/an/a0
Chromosome 5OU015378.1n/an/a0
Chromosome 6OU015379.1n/an/a0
Chromosome 7OU015380.1n/an/a0
Chromosome 8OU015381.1n/an/a0
Chromosome 9OU015382.1n/an/a0
Chromosome 10OU015383.1n/an/a0
Chromosome 11OU015384.1n/an/a0
Chromosome 12OU015385.1n/an/a0
Chromosome 13OU015386.1n/an/a0
Chromosome 14OU015387.1n/an/a0
Chromosome 15OU015388.1n/an/a0
Chromosome 16OU015389.1n/an/a0
Chromosome 17OU015390.1n/an/a0
Chromosome 18OU015391.1n/an/a0
Chromosome XOU015392.1n/an/a0
unplacedn/an/an/a18,283

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,302,401,61118,3022,258,756,971124,365,287109,2710
Chromosome 1203,690,4751200,568,674203,690,4759,7370
Chromosome 2159,861,4461157,383,485159,861,4467,1920
Chromosome 3149,128,7431146,924,173149,128,7436,8670
Chromosome 4144,605,7611141,836,939144,605,7617,1420
Chromosome 5128,756,0321125,948,112128,756,0326,6040
Chromosome 6138,992,0231136,969,613138,992,0236,6400
Chromosome 7124,365,2871121,906,467124,365,2875,9250
Chromosome 8124,420,7571122,303,849124,420,7576,0800
Chromosome 9117,373,2111114,784,805117,373,2115,6710
Chromosome 10120,866,9561118,661,026120,866,9565,9050
Chromosome 11112,644,0471110,177,492112,644,0475,8660
Chromosome 12122,244,5191119,733,259122,244,5196,0120
Chromosome 1385,730,870182,926,35085,730,8705,1590
Chromosome 14100,415,147198,184,427100,415,1475,4300
Chromosome 1580,520,786178,383,29380,520,7864,0550
Chromosome 1677,604,179175,796,76077,604,1793,7830
Chromosome 1736,818,564136,493,42436,818,5641,8270
Chromosome 1814,035,028112,978,59814,035,0281,1200
Chromosome X108,788,5301107,563,460108,788,5304,6790
unplaced151,539,25018,283149,232,76516,9683,5770