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mAcoPer2_REL_1905

Organism name:
Acomys percivali (Percival's spiny mouse)
BioSample:
SAMEA8478153
BioProject:
PRJEB44012
Submitter:
WELLCOME TRUST SANGER INSTITUTE
Date:
2021/07/06
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_907169655.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAJRSG01
Genome coverage:
97x

IDs: 10453411 [UID] 27758308 [GenBank]

See Genome Information for Acomys percivali

Pathogen Detection Resources

History (Show revision history)

Comment

Global statistics

Total sequence length2,302,049,166
Total ungapped length2,235,673,742
Gaps between scaffolds0
Number of scaffolds22,442
Scaffold N50126,270,630
Scaffold L508
Number of contigs160,804
Contig N5026,477
Contig L5025,322
Total number of chromosomes and plasmids19
Number of component sequences (WGS or clone)22,442

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_907169654.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OU015742.1n/an/a0
Chromosome 2OU015743.1n/an/a0
Chromosome 3OU015744.1n/an/a0
Chromosome 4OU015745.1n/an/a0
Chromosome 5OU015746.1n/an/a0
Chromosome 6OU015747.1n/an/a0
Chromosome 7OU015748.1n/an/a0
Chromosome 8OU015749.1n/an/a0
Chromosome 9OU015750.1n/an/a0
Chromosome 10OU015751.1n/an/a0
Chromosome 11OU015752.1n/an/a0
Chromosome 12OU015753.1n/an/a0
Chromosome 13OU015754.1n/an/a0
Chromosome 14OU015755.1n/an/a0
Chromosome 15OU015756.1n/an/a0
Chromosome 16OU015757.1n/an/a0
Chromosome 17OU015758.1n/an/a0
Chromosome 18OU015759.1n/an/a0
Chromosome XOU015760.1n/an/a0
unplacedn/an/an/a22,423

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,302,049,16622,4422,235,673,742126,270,630138,3620
Chromosome 1206,834,1311201,831,610206,834,13112,3560
Chromosome 2161,244,7761156,753,516161,244,7769,1130
Chromosome 3149,934,5141146,237,424149,934,5148,7840
Chromosome 4145,297,7651141,159,475145,297,7658,9850
Chromosome 5130,657,1351126,150,164130,657,1358,2290
Chromosome 6145,501,6511141,575,819145,501,6518,7100
Chromosome 7126,270,6301122,526,670126,270,6307,3810
Chromosome 8126,237,9411122,544,821126,237,9417,9320
Chromosome 9118,256,3071114,741,917118,256,3077,1950
Chromosome 10125,397,5131121,801,563125,397,5137,5180
Chromosome 11132,379,1531128,507,633132,379,1538,1910
Chromosome 12109,598,2291106,386,149109,598,2296,7650
Chromosome 1386,120,762182,748,57286,120,7626,4210
Chromosome 14101,091,261198,063,671101,091,2616,6910
Chromosome 1584,648,590181,757,04084,648,5905,3010
Chromosome 1678,221,726176,080,86678,221,7264,7040
Chromosome 1738,986,706138,381,27638,986,7062,4650
Chromosome 1813,292,943112,030,37313,292,9431,1570
Chromosome X116,584,2351113,755,945116,584,2355,9240
unplaced105,493,19822,423102,639,2388,0734,5400