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Release 6

Release 6 plus MT

This assembly has been replaced. See current version

Description:

Release 6 plus composite mitochondrial genome

Organism name:

Drosophila melanogaster (fruit fly)

BioSample:

SAMN02803731

BioProject:

PRJNA13812

Submitter:

The FlyBase Consortium/Berkeley Drosophila Genome Project/Celera Genomics

Date:

2014/07/25

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000001215.3 (replaced)

RefSeq assembly accession:

GCF_000001215.3 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

IDs: 202921 [UID] 1186768 [GenBank] 1186788 [RefSeq]

See Genome Information for Drosophila melanogaster

Pathogen Detection Resources

There are 119 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001215.4	=	GCF_000001215.4	Release 6 plus ISO1 MT	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001215.3	≠	GCF_000001215.3	Release 6 plus MT	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001215.2	≠	GCF_000001215.2	Release 5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001215.1	=	GCF_000001215.1	Release 5	Chromosome	GenBank suppressed, RefSeq suppressed

Comment

This is Release 6 of the Drosophila melanogaster genome, produced jointly by the Berkeley Drosophila Genome Project, Celera Genomics, and the Drosophila Heterochromatin Genome Project. The gene annotation is based on Release 6.54 provided by FlyBase. Additional information about ... this assembly and annotation can be found at http://www.fruitfly.org and http://flybase.org.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::FlyBase
Annotation Status::Full annotation
Annotation Version::Release 6.54
URL::http://flybase.org
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	143,725,995
Total ungapped length	142,573,017
Gaps between scaffolds	0
Number of scaffolds	1,870
Scaffold N50	25,286,936
Scaffold L50	3
Number of contigs	2,442
Contig N50	21,485,538
Contig L50	3
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	1,870

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome X	AE014298.5	=	NC_004354.4	446
Chromosome 2L	AE014134.6	=	NT_033779.5	0
Chromosome 2R	AE013599.5	=	NT_033778.4	0
Chromosome 3L	AE014296.5	=	NT_037436.4	0
Chromosome 3R	AE014297.3	=	NT_033777.3	0
Chromosome 4	AE014135.4	=	NC_004353.4	0
Chromosome Y	CP007106.1	=	NC_024512.1	199
unplaced	n/a	n/a	n/a	1,217

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	143,706,478	1,869	142,553,500	25,286,936	572	0
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	24,547,61623,542,2711,005,345	4471446	24,408,58123,476,151932,430	23,542,27123,542,2712,307	361026	000
Chromosome 2L	Assembled molecule	23,513,712	1	23,513,512	23,513,712	2	0
Chromosome 2R	Assembled molecule	25,286,936	1	25,280,236	25,286,936	8	0
Chromosome 3L	Assembled molecule	28,110,227	1	27,992,067	28,110,227	9	0
Chromosome 3R	Assembled molecule	32,079,331	1	32,054,759	32,079,331	27	0
Chromosome 4	Assembled molecule	1,348,131	1	1,331,131	1,348,131	1	0
Chromosome Y	AllAssembled moleculeUnlocalized scaffolds	4,527,5753,667,352860,223	2001199	4,204,4613,409,719794,742	3,667,3523,667,35225,805	27421163	000
unplaced	Assembled molecule	4,292,950	1,217	3,768,753	6,041	215	0

Assembly

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Release 6

Release 6 plus MT

See Genome Information for Drosophila melanogaster

Pathogen Detection Resources

There are 119 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear