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NCBI35

This assembly has been replaced. See current version

Organism name:: Homo sapiens (human)
BioProject:: PRJNA31257
Submitter:: International Human Genome Sequencing Consortium
Date:: 2004/08/24
Synonyms:: hg17
Assembly type:: haploid-with-alt-loci
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: n/a
RefSeq assembly accession:: GCF_000001405.11 (replaced)
RefSeq assembly and GenBank assembly identical:: n/a

IDs: 2908 [UID] 2908 [RefSeq]

See Genome Information for Homo sapiens

There are 1094 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000001405.29	≠	GCF_000001405.40	GRCh38.p14	Chromosome	Latest GenBank, Latest RefSeq
GCA_000001405.28	≠	GCF_000001405.39	GRCh38.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.27	≠	GCF_000001405.38	GRCh38.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.26	=	GCF_000001405.37	GRCh38.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.25	=	GCF_000001405.36	GRCh38.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.24	=	GCF_000001405.35	GRCh38.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.23	=	GCF_000001405.34	GRCh38.p8	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.22	=	GCF_000001405.33	GRCh38.p7	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.21	=	GCF_000001405.32	GRCh38.p6	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.20	=	GCF_000001405.31	GRCh38.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.19	=	GCF_000001405.30	GRCh38.p4	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.18	=	GCF_000001405.29	GRCh38.p3	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.17	=	GCF_000001405.28	GRCh38.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.16	=	GCF_000001405.27	GRCh38.p1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.15	=	GCF_000001405.26	GRCh38	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.14	=	GCF_000001405.25	GRCh37.p13	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.13	=	GCF_000001405.24	GRCh37.p12	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.12	=	GCF_000001405.23	GRCh37.p11	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.11	=	GCF_000001405.22	GRCh37.p10	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.10	=	GCF_000001405.21	GRCh37.p9	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.9	n/a	n/a	GRCh37.p8	Chromosome	Replaced GenBank
GCA_000001405.8	n/a	n/a	GRCh37.p7	Chromosome	Replaced GenBank
GCA_000001405.7	n/a	n/a	GRCh37.p6	Chromosome	Replaced GenBank
GCA_000001405.6	=	GCF_000001405.17	GRCh37.p5	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.5	n/a	n/a	GRCh37.p4	Chromosome	Replaced GenBank
GCA_000001405.4	n/a	n/a	GRCh37.p3	Chromosome	Replaced GenBank
GCA_000001405.3	=	GCF_000001405.14	GRCh37.p2	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000001405.2	n/a	n/a	GRCh37.p1	Chromosome	Replaced GenBank
GCA_000001405.1	=	GCF_000001405.13	GRCh37	Chromosome	Replaced GenBank, Replaced RefSeq
n/a	n/a	GCF_000001405.12	NCBI36	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.11	NCBI35	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.10	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.9	NCBI34	Chromosome	Replaced RefSeq
n/a	n/a	GCF_000001405.8	NCBI33	Chromosome	Replaced RefSeq

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Status::Full annotation
Annotation Version::Homo sapiens Annotation Release 105
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
Annotation Software Version::5.1
Annotation Method::Best-placed RefSeq; Gnomon
Features Annotated::Gene; mRNA; CDS; ncRNA
##Genome-Annotation-Data-END##

Global statistics*

Number of regions with alternate loci or patches	4
Total sequence length	3,091,360,260
Total ungapped length	2,865,812,574
Gaps between scaffolds	344
Number of scaffolds	377
Scaffold N50	38,509,590
Scaffold L50	25
Number of contigs	1,215
Contig N50	37,760,040
Contig L50	26
Total number of chromosomes and plasmids	24
Number of component sequences (WGS or clone)	26,866

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Name	Location
PAR#1	X:1-2692881
PAR#2	X:154494748-154824264
PAR#1	Y:1-2692881
PAR#2	Y:57372175-57701691

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	n/a	n/a	NC_000001.8	14
Chromosome 2	n/a	n/a	NC_000002.9	2
Chromosome 3	n/a	n/a	NC_000003.9	5
Chromosome 4	n/a	n/a	NC_000004.9	6
Chromosome 5	n/a	n/a	NC_000005.8	1
Chromosome 6	n/a	n/a	NC_000006.9	2
Chromosome 7	n/a	n/a	NC_000007.11	4
Chromosome 8	n/a	n/a	NC_000008.9	8
Chromosome 9	n/a	n/a	NC_000009.9	8
Chromosome 10	n/a	n/a	NC_000010.8	1
Chromosome 11	n/a	n/a	NC_000011.8	0
Chromosome 12	n/a	n/a	NC_000012.9	1
Chromosome 13	n/a	n/a	NC_000013.9	1
Chromosome 14	n/a	n/a	NC_000014.7	0
Chromosome 15	n/a	n/a	NC_000015.8	5
Chromosome 16	n/a	n/a	NC_000016.8	1
Chromosome 17	n/a	n/a	NC_000017.9	17
Chromosome 18	n/a	n/a	NC_000018.8	1
Chromosome 19	n/a	n/a	NC_000019.8	2
Chromosome 20	n/a	n/a	NC_000020.9	0
Chromosome 21	n/a	n/a	NC_000021.7	0
Chromosome 22	n/a	n/a	NC_000022.8	2
Chromosome X	n/a	n/a	NC_000023.8	5
Chromosome Y	n/a	n/a	NC_000024.7	0

Molecule	Sequence Role	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	Assembled molecule	3,091,360,260	377	2,865,812,574	38,509,590	856	344
Chromosome 1	AllAssembled moleculeUnlocalized scaffolds	248,769,978245,522,8473,247,131	513714	226,051,438222,827,8473,223,591	56,331,64656,331,6461,637,740	2440244	51510
Chromosome 2	AllAssembled moleculeUnlocalized scaffolds	243,386,387243,018,229368,158	23212	237,871,236237,503,378367,858	68,373,98068,373,980185,571	633	21210
Chromosome 3	AllAssembled moleculeUnlocalized scaffolds	200,276,456199,505,740770,716	1055	195,406,456194,635,740770,716	100,530,261100,530,261146,010	000	770
Chromosome 4	AllAssembled moleculeUnlocalized scaffolds	192,191,500191,411,218780,282	21156	187,941,500187,161,218780,282	23,438,00923,438,009161,147	000	15150
Chromosome 5	AllAssembled moleculeUnlocalized scaffolds	181,001,553180,857,866143,687	761	177,846,453177,702,766143,687	41,199,37141,199,371143,687	000	770
Chromosome 6	AllAssembled moleculeUnlocalized scaffolds	172,801,261170,975,6991,825,562	1192	169,140,461167,317,6991,822,762	48,945,89048,945,8901,305,230	28028	11110
Chromosome 7	AllAssembled moleculeUnlocalized scaffolds	159,257,103158,628,139628,964	16124	155,386,203154,759,139627,064	47,497,09747,497,097179,305	19019	12120
Chromosome 8	AllAssembled moleculeUnlocalized scaffolds	146,868,636146,274,826593,810	18108	143,203,485142,612,826590,659	38,454,50238,454,502183,161	59158	990
Chromosome 9	AllAssembled moleculeUnlocalized scaffolds	139,391,933138,429,268962,665	50428	118,737,574117,781,268956,306	39,435,72639,435,726173,443	61061	54540
Chromosome 10	AllAssembled moleculeUnlocalized scaffolds	135,526,903135,413,628113,275	20191	131,724,681131,613,628111,053	30,112,61330,112,613113,275	23023	21210
Chromosome 11	Assembled molecule	134,452,384	8	131,130,753	38,509,590	1	8
Chromosome 12	AllAssembled moleculeUnlocalized scaffolds	132,916,629132,449,811466,818	981	130,723,229130,259,311463,918	32,815,93432,815,934466,818	32329	990
Chromosome 13	AllAssembled moleculeUnlocalized scaffolds	114,329,838114,142,980186,858	651	95,746,83895,559,980186,858	67,740,32567,740,325186,858	000	880
Chromosome 14	Assembled molecule	106,368,585	1	88,290,585	88,290,585	0	3
Chromosome 15	AllAssembled moleculeUnlocalized scaffolds	100,923,261100,338,915584,346	16115	81,920,10381,341,915578,188	53,619,96553,619,965139,260	50050	12120
Chromosome 16	AllAssembled moleculeUnlocalized scaffolds	88,932,73988,827,254105,485	651	78,990,18978,884,754105,435	42,003,58242,003,582105,485	101	660
Chromosome 17	AllAssembled moleculeUnlocalized scaffolds	80,592,75278,774,7421,818,010	271017	79,608,67877,800,2201,808,458	21,163,83321,163,833147,354	1690169	10100
Chromosome 18	AllAssembled moleculeUnlocalized scaffolds	76,121,41576,117,1534,262	651	74,660,41774,656,1554,262	20,074,19920,074,1994,262	000	440
Chromosome 19	AllAssembled moleculeUnlocalized scaffolds	64,063,50963,811,651251,858	642	56,037,50955,785,651251,858	31,383,02931,383,029159,169	000	770
Chromosome 20	Assembled molecule	62,435,964	6	59,505,253	26,144,333	0	6
Chromosome 21	Assembled molecule	46,944,323	4	34,171,438	28,617,429	6	5
Chromosome 22	AllAssembled moleculeUnlocalized scaffolds	49,762,02849,554,710207,318	12102	34,972,12834,764,810207,318	23,276,30223,276,302166,566	000	13130
Chromosome X	AllAssembled moleculeUnlocalized scaffolds	156,343,432154,824,2641,519,168	26215	151,874,276150,394,2641,480,012	27,718,69227,718,6921,005,289	1570157	27270
Chromosome Y	Assembled molecule	57,701,691	17	24,871,691	6,265,435	0	18

Unit Name	Scaffold Count	Total Length	Ungapped Length	Scaffold N50	Spanned Gaps
DR52	1	139,182	139,182	139,182	0
DR53	1	150,447	150,447	150,447	0

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NCBI35

See Genome Information for Homo sapiens

There are 1094 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics*

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