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Source database (GenBank or RefSeq) File type

UMICH_Zoey_3.1

Organism name:

Canis lupus familiaris (dog)

Infraspecific name:

Breed: Great Dane

Isolate:

Zoey

Sex:

female

BioSample:

SAMN04851098

BioProject:

PRJNA318403

Submitter:

University of Michigan

Date:

2019/05/30

Synonyms:

canFam5

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_005444595.1 (latest)

RefSeq assembly accession:

GCF_005444595.1 (suppressed)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for GenBank version

WGS Project:

REHQ01

Assembly method:

FALCON v. 1.7.7

Expected final version:

yes

Reference guided assembly:

GCA_000002285.2

Genome coverage:

50.0x

Sequencing technology:

PacBio RSII

Linked assembly:

GCA_005446665.1 (alternate pseudohaplotype of diploid)

IDs: 3218611 [UID] 10748178 [GenBank] 20192208 [RefSeq]

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_005444595.1	≠	GCF_005444595.1	UMICH_Zoey_3.1	Chromosome	Latest GenBank, RefSeq suppressed

Comment

This assembly represents the principal pseudohaplotype of the diploid genome Canis lupus familiaris breed Great Dane isolate Zoey. The alternate pseudohaplotype sequences are in WGS project SWLD00000000.

Global statistics

Total sequence length	2,343,218,756
Total ungapped length	2,337,131,246
Gaps between scaffolds	0
Number of scaffolds	794
Scaffold N50	64,204,256
Scaffold L50	14
Number of contigs	1,793
Contig N50	4,722,218
Contig L50	140
Total number of chromosomes and plasmids	40
Number of component sequences (WGS or clone)	794

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM016569.1	=	NC_049261.1	0
Chromosome 2	CM016570.1	=	NC_049262.1	0
Chromosome 3	CM016571.1	=	NC_049263.1	0
Chromosome 4	CM016572.1	=	NC_049264.1	0
Chromosome 5	CM016573.1	=	NC_049265.1	0
Chromosome 6	CM016574.1	=	NC_049266.1	0
Chromosome 7	CM016575.1	=	NC_049267.1	0
Chromosome 8	CM016576.1	=	NC_049268.1	0
Chromosome 9	CM016577.1	=	NC_049269.1	0
Chromosome 10	CM016578.1	=	NC_049270.1	0
Chromosome 11	CM016579.1	=	NC_049271.1	0
Chromosome 12	CM016580.1	=	NC_049272.1	0
Chromosome 13	CM016581.1	=	NC_049273.1	0
Chromosome 14	CM016582.1	=	NC_049274.1	0
Chromosome 15	CM016583.1	=	NC_049275.1	0
Chromosome 16	CM016584.1	=	NC_049276.1	0
Chromosome 17	CM016585.1	=	NC_049277.1	0
Chromosome 18	CM016586.1	=	NC_049278.1	0
Chromosome 19	CM016587.1	=	NC_049279.1	0
Chromosome 20	CM016588.1	=	NC_049280.1	0
Chromosome 21	CM016589.1	=	NC_049281.1	0
Chromosome 22	CM016590.1	=	NC_049282.1	0
Chromosome 23	CM016591.1	=	NC_049283.1	0
Chromosome 24	CM016592.1	=	NC_049284.1	0
Chromosome 25	CM016593.1	=	NC_049285.1	0
Chromosome 26	CM016594.1	=	NC_049286.1	0
Chromosome 27	CM016595.1	=	NC_049287.1	0
Chromosome 28	CM016596.1	=	NC_049288.1	0
Chromosome 29	CM016597.1	=	NC_049289.1	0
Chromosome 30	CM016598.1	=	NC_049290.1	0
Chromosome 31	CM016599.1	=	NC_049291.1	0
Chromosome 32	CM016600.1	=	NC_049292.1	0
Chromosome 33	CM016601.1	=	NC_049293.1	0
Chromosome 34	CM016602.1	=	NC_049294.1	0
Chromosome 35	CM016603.1	=	NC_049295.1	0
Chromosome 36	CM016604.1	=	NC_049296.1	0
Chromosome 37	CM016605.1	=	NC_049297.1	0
Chromosome 38	CM016606.1	=	NC_049298.1	0
Chromosome X	CM016607.1	=	NC_049299.1	0
unplaced	n/a	n/a	n/a	754

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,343,202,000	793	2,337,114,490	64,204,256	999
Chromosome 1	122,894,117	1	122,657,462	122,894,117	48
Chromosome 2	82,903,020	1	82,674,692	82,903,020	35
Chromosome 3	92,032,900	1	91,883,496	92,032,900	30
Chromosome 4	88,429,730	1	88,211,667	88,429,730	36
Chromosome 5	89,245,444	1	89,086,631	89,245,444	29
Chromosome 6	77,758,088	1	77,473,621	77,758,088	34
Chromosome 7	80,745,686	1	80,694,009	80,745,686	16
Chromosome 8	74,192,687	1	73,936,727	74,192,687	32
Chromosome 9	60,772,386	1	60,566,815	60,772,386	39
Chromosome 10	70,059,352	1	69,926,762	70,059,352	30
Chromosome 11	74,036,318	1	73,923,175	74,036,318	37
Chromosome 12	72,762,459	1	72,622,705	72,762,459	27
Chromosome 13	63,682,632	1	63,441,165	63,682,632	22
Chromosome 14	61,098,034	1	61,008,422	61,098,034	27
Chromosome 15	64,289,916	1	64,175,254	64,289,916	30
Chromosome 16	59,281,881	1	59,114,230	59,281,881	39
Chromosome 17	64,204,256	1	64,062,870	64,204,256	28
Chromosome 18	55,934,595	1	55,627,976	55,934,595	38
Chromosome 19	53,975,570	1	53,804,326	53,975,570	31
Chromosome 20	57,931,936	1	57,894,876	57,931,936	11
Chromosome 21	50,995,378	1	50,843,553	50,995,378	26
Chromosome 22	61,534,057	1	61,486,689	61,534,057	12
Chromosome 23	52,790,355	1	52,743,613	52,790,355	13
Chromosome 24	47,687,389	1	47,589,995	47,687,389	16
Chromosome 25	51,695,226	1	51,521,933	51,695,226	25
Chromosome 26	38,422,312	1	38,249,819	38,422,312	17
Chromosome 27	46,166,038	1	46,077,298	46,166,038	22
Chromosome 28	41,338,898	1	41,316,429	41,338,898	10
Chromosome 29	42,070,705	1	41,926,436	42,070,705	21
Chromosome 30	40,358,978	1	40,217,506	40,358,978	14
Chromosome 31	39,389,883	1	39,295,788	39,389,883	11
Chromosome 32	39,041,421	1	38,997,598	39,041,421	15
Chromosome 33	31,430,699	1	31,399,161	31,430,699	11
Chromosome 34	42,177,406	1	42,113,948	42,177,406	21
Chromosome 35	26,483,662	1	26,447,405	26,483,662	8
Chromosome 36	31,110,614	1	31,103,394	31,110,614	9
Chromosome 37	30,840,041	1	30,765,120	30,840,041	9
Chromosome 38	23,826,045	1	23,765,584	23,826,045	13
Chromosome X	122,739,558	1	121,644,708	122,739,558	103
unplaced	16,872,328	754	16,821,632	37,188	4

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UMICH_Zoey_3.1

See Genome Information for Canis lupus

Pathogen Detection Resources

There are 27 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear